Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01094 ATGCTCCTCCAGCCATTACTTTGCGGTTCAAAAGTCGCATCTCAATCTACACTTTTCGCTTCGGTGTTTTCAGCCGGAAACAACGCCGGCCGCTCTTCGTTTACCGCAAATTCGTCCGTCCGTGACGTGAGGCCGGTGAGGCTTATGAAGCAAGCATCGGGAAGCATAACGAACAATGAACGTGGAGTTTTTAGTGAGATAATGGATCGTCCCAAGCTTAGGACACCTGATGCTTATGGCCGTCGTGTTCAAGAAGGGGTTCTTGAGGAAGAATCCTCCAAAGTGATGGAGAGCAGACCATCATGGAAAATTTTCCCAGGCCAGGCATTTCCATTGGGTGTATCAGAAGTTGACAGTGGCATCAATTTTTCTATATTTTCACAACATGCAACTGCTGTCACACTTTGTTTAGTCCTTCCTGAGAGGGGAAGTATAGACACCATGAATGGTGGCATGATAGAACTAGTTTTGGATCCTGATTTGAACAAAACTGGGGACATTTGGCACATATGTATTGAGGATCTTCCTCGAAGCAATGTTCTATACGGATATCGCATAGATGGACCTCAAGACTGGGGTAAGGGGCATCGATTTGACAGCAGCATTGTGCTTGTTGATCCTTATGCAAAACTAGTTGAAGGTCGAAGATATTTTGGGGATATTAGCACAAAGTTGTCTAAGTTTCTTGGCACATATGATTTTGACAGCTTGCCTTTCGATTGGGGAGAAAATTACAAGCTTCCAAATATTTCTGAGAAAGATCTTGTTATATATGAGATGAATGTCCGTGCATTTACAATTGATGAATCTAGTGGTTTGGATAGCAACATTCGTGGCAGCTATCTTGGTGTGATTGAAAAGATTCCACACCTTCTAGAGCTTGGTATCAATGCAGTAGAATTGCTGCCTGTCTTTGAGTTTGATGAGTTGGAATTCCAGAGGCGTCCAAATCCCAGAGATCACATGATTAATACATGGGGTTATTCTACAATAAATTTCTTTTCTCCTATGAGTCGCTATGCTAGTGCGGGTGGAGGATCAGTTAATGCTTCTCGAGAGTTCAAAGAAATGGTTAAAGCCTTACATTCTTCTGGTATAGAGGTTATTTTGGATGTGGTCTATAATCATACTAATGAGGCTGATGATGCCAATCCTTACACTACCTCGTTTCGTGGCATAGATAATAAGGTCTATTACATGCTGGACAATAATGGGCAATTGCTGAACTTCTCTGGCTGTGGAAATACATTAAATTGTAACCATGCTGTGGTTACGGAGCTAATTCTTGACAGCCTAAGACACTGGGTCACTGAATATCACGTGGATGGATTTCGATTTGATCTTGCAAGTGTCCTGTGTCGAGGAATTGATGGCTCCCCCCTTAATGCCCCCCCAATTATTAGGGCAATTGCTAAAGATGCAGTCTTATCAAGATGTAAAATTATTGCAGAGCCTTGGGATTGTGGAGGTCTTTATCTTGTTGGGAGTTTTCCAAATTGGGATCGGTGGGCTGAATGGAATGGGAAATATCGTGATGATGTACGGAAATTTATTAAGGGTGATTATGGTGTGAAGGGGAGCTTTGCTACTCGTGTTGCCGGGTCTTCTGATCTTTACAAAATGAACAAGCGAAGGCCATATCATAGTATTAACTTCGTTATTGCACATGATGGATTCACCTTGCGTGATCTTGTTTCATACAATTTGAAGCACAATGAAGCAAATGGGGAAGGTGGAAATGATGGTAGCAATGATAATTTTAGTTGGAATTGTGGTTTTGAAGGGGAAACTGATGATGCTAGTATAAGAGCTTTGCGATCAAGGCAAATGAAAAACTTTCACTTGGCACTAATGATATCTCAGGGTACACCAATGATGCTAATGGGAGATGAATATGGTCATACTCGCAATGGAAATAACAATAGTTATGGGCATGATACCACCATAAATAATTTTTTGTGGGATCAGTTGGATGCCCAGAAGAGTGATCACTTCAGGTTTTTCTCGAAGGTGATAAAGTACAGGCATGCACATGAAGTATTCAGTCATGAAAGTTTTCTCGGCAAGAATGACATAACATGGCATGAAGACAATTGGGATAACCATGACAGCAAATTTCTTGCATTCACGCTTCATGACAGGAGCGGGGCAGATATCTATTTGGCATTTAATGCTCACAATTACTTTGTCAAAGTTCTGCTGCCCACACCTCCAGAAATGAGGAAGTGGTTCCGTGTGGGGGACACTAATCTCAACTCACCGGAGGACTTTGTTCTAGATGGTGTTCATAGGATAGGAAACACGTATAATATAGCTCCATACTCCTCCATTCTTCTTGAGGCGAAGTATTGA 2352 0.4192 MLLQPLLCGSKVASQSTLFASVFSAGNNAGRSSFTANSSVRDVRPVRLMKQASGSITNNERGVFSEIMDRPKLRTPDAYGRRVQEGVLEEESSKVMESRPSWKIFPGQAFPLGVSEVDSGINFSIFSQHATAVTLCLVLPERGSIDTMNGGMIELVLDPDLNKTGDIWHICIEDLPRSNVLYGYRIDGPQDWGKGHRFDSSIVLVDPYAKLVEGRRYFGDISTKLSKFLGTYDFDSLPFDWGENYKLPNISEKDLVIYEMNVRAFTIDESSGLDSNIRGSYLGVIEKIPHLLELGINAVELLPVFEFDELEFQRRPNPRDHMINTWGYSTINFFSPMSRYASAGGGSVNASREFKEMVKALHSSGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMLDNNGQLLNFSGCGNTLNCNHAVVTELILDSLRHWVTEYHVDGFRFDLASVLCRGIDGSPLNAPPIIRAIAKDAVLSRCKIIAEPWDCGGLYLVGSFPNWDRWAEWNGKYRDDVRKFIKGDYGVKGSFATRVAGSSDLYKMNKRRPYHSINFVIAHDGFTLRDLVSYNLKHNEANGEGGNDGSNDNFSWNCGFEGETDDASIRALRSRQMKNFHLALMISQGTPMMLMGDEYGHTRNGNNNSYGHDTTINNFLWDQLDAQKSDHFRFFSKVIKYRHAHEVFSHESFLGKNDITWHEDNWDNHDSKFLAFTLHDRSGADIYLAFNAHNYFVKVLLPTPPEMRKWFRVGDTNLNSPEDFVLDGVHRIGNTYNIAPYSSILLEAKY 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01094 783 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 111 209 IPR004193 GO:0004553|GO:0005975
Phco7g01094 783 Pfam Alpha amylase, catalytic domain 280 397 IPR006047 GO:0005975
Phco7g01094 783 SUPERFAMILY Glycosyl hydrolase domain 688 782 - -
Phco7g01094 783 CDD E_set_GDE_Isoamylase_N 110 259 IPR044505 -
Phco7g01094 783 Gene3D - 690 783 IPR013780 -
Phco7g01094 783 SMART aamy 259 666 IPR006047 GO:0005975
Phco7g01094 783 PANTHER GLYCOGEN DEBRANCHING ENZYME 85 782 - -
Phco7g01094 783 FunFam Glycogen debranching enzyme 235 689 - -
Phco7g01094 783 CDD AmyAc_Glg_debranch 239 678 - -
Phco7g01094 783 Gene3D Immunoglobulins 91 229 IPR013783 -
Phco7g01094 783 SUPERFAMILY E set domains 106 243 IPR014756 -
Phco7g01094 783 Gene3D Glycosidases 235 689 - -
Phco7g01094 783 SUPERFAMILY (Trans)glycosidases 238 682 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01094 Phco-Chr7 9232423 9249077 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01094 7 9232423 9249077 Phco7g01094 7 9232423 9249077 ECH