Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01081 ATGTCACACCGTCCGTTCATCAGCCCCGAGATGGCGAACCGCCCCCTCTCCGCCGGAATCAGACGTTTTGTGTTCGGCGCGAGAACTCTTTGTAACACCGTTACTTCTCGCGCTTCGGCGTTGCACGTGCCGTTCTTGCGCAAGCTCAAATCCCCGAAGCTGAATCCATTGCTGGTGCTTCAAAATTGGGTGGACGAAGGCAACGATGTTTCACCCTCCCAGCTCAGAAGCATCGCCAGAACCCTCGTCAAATCGAAACGCTACCACCACGCCCTCGAGTTATTTAAGTGGATAGAAAACCAGAAGAATTTCCATATGATCCCAGTTGATCATGCTATGAAATTGGAGTTAATCATTGAAAATTATGGTTTAATGGAAGCCGAAGAATATTTTTTGAATTTACGTGACTCGGCTGCAAAGAAGGCTACCTGTCTCACCCTTCTGCGTGGGTATGTAAGATGTAGGGACACTTGTAAGGCTGAGGCTTTAATGGTGAAGCTCTATGAACTGGGGCTAGTGGTAAGCCCTCACCCTTTTAATGAGATGATGAAGCTGTATCTAGTGACATGTGAGTACAGGAAGGTACCCCTTGTTATCCAGCAAATGAAGCGGAATAAAGTACCCTGCAATGTGCTCTCCTACAATCTTTGGATGAATGCTTATAGTGAGGAAGTTGGATACGGGACTGCAGCAGTAGAGACAGTTTTTAGACAAATGCAAAATGACAAGAACGTTGAAGTGGGATGGAGCAGTCTTGCTACATTAGCCAATGTTTATAAGAAAGCAGGTCAACCTAAGAAAGCCATTCTAGTTCTCAAAGATGCTGAAAAGAAACTATGTACCTGTAATCATCTTGGTTACTTCTTCCTCATAACACTATATGCTTCTTTGAAGGAAAAGGAAGGAGTCTTACGGTTATGGGAAGCTAGTAAGGCAGTTGGTGAAAGAATCAGTTGTGCTAACTACATTTGCATACTAACATGCTTGGTGAAGCTTGGGGACATTCTACAAGCCAAGAGAATCTTTTTAGAATGGGAATCTAATTGTCAGAAGTATGATATCAGAGTCTCTAATGTTCTTTTGGGTGCATATGTGAGGAATGGATTAATGGAAGAAGCTGAATCATTACATCTCCACACATTGCAAAAGGGTGGCTGTCCAAACTATAAGACAATGGAAATTCTTGTAGAAGGATATGTGAATAGGCAAAAAATAGACGAGGCTATTATTGCAATGAAAAGAGCTTTGGCTATGATGAAAAATTGTCATTGGAGGCCACCACATGGACTTGTGTTAGCCATTGCAGAGTTTTTGGAGAAAGATGGGAATCTTGAACATGCAAACAATTATATTACAGATATCCATAATTTTGGTCTTGCTAGTTTATCATTGTATAAAATATTACTAAGAATGCATCTTTATGCCAACAAACCACATTTCCATATCCTTAAAATGATGGATGAAGATAAGGTTGAGATGGATGATGAGGCACATTCCATTGTTAAAGCTTTCACTGTGCTGAAAAGTTCGGAGGTGAAGCAGTAA 1545 0.4175 MSHRPFISPEMANRPLSAGIRRFVFGARTLCNTVTSRASALHVPFLRKLKSPKLNPLLVLQNWVDEGNDVSPSQLRSIARTLVKSKRYHHALELFKWIENQKNFHMIPVDHAMKLELIIENYGLMEAEEYFLNLRDSAAKKATCLTLLRGYVRCRDTCKAEALMVKLYELGLVVSPHPFNEMMKLYLVTCEYRKVPLVIQQMKRNKVPCNVLSYNLWMNAYSEEVGYGTAAVETVFRQMQNDKNVEVGWSSLATLANVYKKAGQPKKAILVLKDAEKKLCTCNHLGYFFLITLYASLKEKEGVLRLWEASKAVGERISCANYICILTCLVKLGDILQAKRIFLEWESNCQKYDIRVSNVLLGAYVRNGLMEEAESLHLHTLQKGGCPNYKTMEILVEGYVNRQKIDEAIIAMKRALAMMKNCHWRPPHGLVLAIAEFLEKDGNLEHANNYITDIHNFGLASLSLYKILLRMHLYANKPHFHILKMMDEDKVEMDDEAHSIVKAFTVLKSSEVKQ 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01081 514 PANTHER OS12G0527900 PROTEIN 53 492 - -
Phco7g01081 514 Gene3D Tetratricopeptide repeat domain 47 229 IPR011990 GO:0005515
Phco7g01081 514 Pfam PPR repeat 358 377 IPR002885 -
Phco7g01081 514 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 353 387 IPR002885 -
Phco7g01081 514 Gene3D Tetratricopeptide repeat domain 250 452 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01081 Phco-Chr7 9072657 9078069 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01081 7 9072657 9078069 Phco7g01081 7 9072657 9078069 ECH