Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00996 ATGTGTAATCCCAAACCATCCTCATCATCCCCATTTCTGTGTCCCACAAAAGCCCACATCATAGCTCCCGACCCCAAACTCAAAAATCACCCTCCCGTTCACGATCAACTTCAAGATGAACTTCACAGATGGCCAACTCCCAAGGAGGTGATAGGAGAAATGAAGGCCCTGGGGAAGATATCAGGACCAACGGCAGTGACGGGGTTACTCTTATATTCAAGAGCCATGATCTCAATGGTCTTCCTAGGCTACCTTGGGGATATGGAGCTGGCGGGAGGGTCTCTGTCCATCGGCTTCGCCAACATCACAGGCTACTCCGTCATCTCAGGTCTTGCCATGGGAATGGAACCCATTTGCGGCCAAGCCTACGGCGCAAAACAATTCAAAACGCTGGGCTTAACCCTCCAGAGAACCGTCCTCCTCCTCCTCTCCACCTCCATCCCCATCTCCCTCACCTGGCTCAACATGAAGTCCATACTCTTATGGTGCGGCCAAGACCACCAGATATCCTCCACCGCACAAACCTTCATCCTCTTCTCCATCCCAGACCTCTTCCTCCTCTCCCTCCTCCACCCTCTCCGCATCTACCTCCGAACACAAAGCATCACATTGCCCCTAACCTACTGCTCCGCCCTCTCCCTCCTCCTCCACCTCCCCCTCAACTTCCTCCTAGTCGTCCACTTCAAAATGGGAGTCTCCGGCGTCGCCATAGCCATGGTCTGGACCAACCTTAACCTCTTCCTCTTCCTCTCCTCCTTCGTCTACTTCTCCGGCGTCTACAAAGACTCCTGGGTGCCCCCCAGCTCCGACTGCCTCCGCGGCTGGTCCTCCCTACTTGCACTTGCGGTTCCCACGTGCGTCTCCGTCTGCCTCGAATGGTGGTGGTACGAACTCGTGATAATCCTCTGCGGGCTTCTCCTCGACCCCAAAGCCACCATTGCTTCCATGGGAATCCTCATCCAAACCACCTCCCTCGTCTACGTCTTCCCCTCCTCCCTCAGCCTCGGCGTCTCCACCCGCGTCGGCAACGAGCTCGGTGCCAACCGCCCCGCCAGGGCCCGCATTTCCATGATAGTCTCACTCGCCTGTGCCGTCGCCCTCGGCCTCGCCGCCATTGCTTTCACCACTCTCATGCGACACCAATGGGGCAGATTCTTCACCGCTGACACCGAAATTCTTGACCTCACCGCCTCCGTCCTCCCCATCGTCGGCCTCTGCGAGCTCGGCAACTGCCCGCAGACCACTGGCTGCGGCGTCCTCCGCGGCAGCGCCCGGCCCACCGTCGGAGCCAACATCAATTTGGCCTCGTTTTATTTGGTGGGCATGCCGGTAGCTGTTCTTCTCGGGTTCGTCGTGAAAATGGGTTTTCCTGGGCTCTGGCTTGGGTTGCTTGCGGCCCAAGCCTCTTGCGCTTCTCTCATGATATTCGTGCTCTGCACCACTGACTGGAACGCTCAAGTGCAGAGGGCCAATGATCTTACCACTGCTAATTCTGCTTCTCCCAAGTTACCTACCACTCTCCCACCAACAACCGCAACTCCACACTCTAACCATGTTTCTCTTCCAGACACTCTTGTCACCCATGATCATCACCTTCCCCACACACCCTCTCTTGAAACAGACCCTCTCATTATACACACCATAAATTAA 1650 0.5636 MCNPKPSSSSPFLCPTKAHIIAPDPKLKNHPPVHDQLQDELHRWPTPKEVIGEMKALGKISGPTAVTGLLLYSRAMISMVFLGYLGDMELAGGSLSIGFANITGYSVISGLAMGMEPICGQAYGAKQFKTLGLTLQRTVLLLLSTSIPISLTWLNMKSILLWCGQDHQISSTAQTFILFSIPDLFLLSLLHPLRIYLRTQSITLPLTYCSALSLLLHLPLNFLLVVHFKMGVSGVAIAMVWTNLNLFLFLSSFVYFSGVYKDSWVPPSSDCLRGWSSLLALAVPTCVSVCLEWWWYELVIILCGLLLDPKATIASMGILIQTTSLVYVFPSSLSLGVSTRVGNELGANRPARARISMIVSLACAVALGLAAIAFTTLMRHQWGRFFTADTEILDLTASVLPIVGLCELGNCPQTTGCGVLRGSARPTVGANINLASFYLVGMPVAVLLGFVVKMGFPGLWLGLLAAQASCASLMIFVLCTTDWNAQVQRANDLTTANSASPKLPTTLPPTTATPHSNHVSLPDTLVTHDHHLPHTPSLETDPLIIHTIN 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00996 549 CDD MATE_eukaryotic 53 489 IPR045069 GO:0042910|GO:1990961
Phco7g00996 549 NCBIfam MATE family efflux transporter 75 460 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Phco7g00996 549 PANTHER MULTIDRUG RESISTANCE PROTEIN 48 483 - -
Phco7g00996 549 Pfam MatE 284 447 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Phco7g00996 549 Pfam MatE 63 223 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Phco7g00996 549 MobiDBLite consensus disorder prediction 496 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00996 Phco-Chr7 8154316 8156177 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00996 7 8154316 8156177 Phco7g00996 7 8154316 8156177 ECH