Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00967 ATGGCGGTTTCCGATAGTCCAAGCGGTGCCTCCACGCCGCCTCAACAGGAACAAGCCAACAAGTACGGTTTCACGAAGCCTCTCTCTCTCGCGGGTCCAACCGACGCTGATCTCCACCGTAACAACGAATTGGAGAAGCTATTACTCGATTCGGGGCTCTATGAGAGCAATGATGACTCCGCTGCGAGGAGAGAGGTTCTTCACCGCCTCGATCAGATTGTGAAAAGCTGGGTGAAGCAGTTGACGCGCCAACGTGGCTACACAGATCAGATGGTTGAGGATGCAAACGCGGTCATTTTCACTTTTGGTTCTTACCGACTTGGGGTTCATGGACCTGGAGTTGACATTGACACTTTGTGCATTGGTCCTTCTTATGTGAACCGAGAGGAAGATTTCTTCATTCTTTTGCATAACATTCTGGCTGAAATGGAAGAAGTTTCTGAACTTCAACCAGTTCCTGATGCACATGTTCCTGTAATGAAATTCAAATTCCAGGGAATATCCATAGATTTGCTGTATGCAAGTATATCACTTTTGGTTGTGCCAGAAGACCTAGATATCTCACATGGTTCAGTGCTGTATGATGTTGATGAACCAACCGTTCGAAGTCTTAATGGCTGTCGGGTGGCAGATCAAATTCTTAAACTTGTTCCAAATATTGAGCACTTCCGAACTACACTGAGATGCTTAAAGTTTTGGGCCAAAAGGCGCGGTGTTTATTCAAATGTTACTGGATTCCTTGGTGGTGTAAATTGGGCTATTTTAGTTGCTCGAATATGCCAGCTTTACCCTAATGCAATCCCTAGTATGTTGGTTTCCCGATTCTTCAGGGTCTATACCCAGTGGCGGTGGCCAAACCCTGTAATGCTATGCTCTATAGAAGAGAATGAACTGGGATTCCCTATATGGGATCCTCGTAGAAACCCCCGAGATAGATTCCACACTATGCCAATAATTACTCCTGCATACCCTTGCATGAATTCAAGCTACAATGTCTCGGCAAGCACTCTTCGTGTCATGATGGAACAGTTCCGCTATGGCAATAAGATTTGTGATGAAATTGACCTCAATAAAGCCCAGTGGAGTGCACTTTTTCAGCCTTACGTCTTTTTTGAGGCATACAAAAACTATTTACAAGTGGACATAGTTGCATCAGACACTGATGATTTACTAGCGTGGAAGGGCTGGGTAGAATCTCGATTGAGGCTGCTTACCCTTAAGATAGAGCGAGATACAAATGGGATGCTGCAGTGCCATCCTTACCCACATGAGTATATAGACACATCCAAGCCTTGTGCACATTCTGCATTTTTTATGGGCTTGCAAAGGAAAGAAGGGGTAAGAGGTCAAGAGGGGCAGCAATTTGATATAAGAGGAACGGTTGATGAATTCAGACAAGAAATAAACATGTATATCTACTGGAAGCCTGGAATGGAAATTTTTGTTTCTCATGTTCGTCGAAAGCAACTCCCTGCATTTGTTTTTCCTGATGGTTACAAACGCAGCAGAATGCCAAGGCATACAGGCCATCCAACTGAAAAAACAGGTGATGATGCCACAAAGTCGTACTCTGGGTCTGGGCCATCTGAAAGATGCATCAAGAGGAAAAGTTACCCTGAAATGGTGGAAAAGAAGCCAGACAAACCAGATAAACGGGCATCTATTAGCCCACAGAGGTTAGAATGTGTTTCTCCTGAAAGTTGTACGAATAAATCTGGTGGTACAGCTCAAATGAGTATTGATAGTATTGAAGGGGTTTGGCTAGCTGGTTCAACAACCAAGTCTGATAACAGCAATTGTGAAATTAAGTCATCTGACGTACTCCCAGGAAGTGGACTAAGCACCGAGGTAGCTGACATGCAGATTAGTGAACCAGGATTTGTTGACACCACACATGATATGTTGAAATCAAGTAGTGTAGAAGTTCCAAATGAGAATGGAGTTGTCAATGGGGACAAAGCTCAGGATCTGGCTTTAGATTGCTCGGAAAGTGAAGAAACCGAATCTACTAACAAGTTTTCACTCTGTAAAGCGGGTGTCATTGATATGGATCAGCGACTAGACAAAGCATGTAATTTCATCACAAGGGATGAATGCTCAGATTATGTACCAAATGCCAGCTCCCAGAACCTCAATTGCGAGGGTGATGTTTGTGTGGCTGATCCAGATCAGTTCTGA 2178 0.4412 MAVSDSPSGASTPPQQEQANKYGFTKPLSLAGPTDADLHRNNELEKLLLDSGLYESNDDSAARREVLHRLDQIVKSWVKQLTRQRGYTDQMVEDANAVIFTFGSYRLGVHGPGVDIDTLCIGPSYVNREEDFFILLHNILAEMEEVSELQPVPDAHVPVMKFKFQGISIDLLYASISLLVVPEDLDISHGSVLYDVDEPTVRSLNGCRVADQILKLVPNIEHFRTTLRCLKFWAKRRGVYSNVTGFLGGVNWAILVARICQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFPIWDPRRNPRDRFHTMPIITPAYPCMNSSYNVSASTLRVMMEQFRYGNKICDEIDLNKAQWSALFQPYVFFEAYKNYLQVDIVASDTDDLLAWKGWVESRLRLLTLKIERDTNGMLQCHPYPHEYIDTSKPCAHSAFFMGLQRKEGVRGQEGQQFDIRGTVDEFRQEINMYIYWKPGMEIFVSHVRRKQLPAFVFPDGYKRSRMPRHTGHPTEKTGDDATKSYSGSGPSERCIKRKSYPEMVEKKPDKPDKRASISPQRLECVSPESCTNKSGGTAQMSIDSIEGVWLAGSTTKSDNSNCEIKSSDVLPGSGLSTEVADMQISEPGFVDTTHDMLKSSSVEVPNENGVVNGDKAQDLALDCSESEETESTNKFSLCKAGVIDMDQRLDKACNFITRDECSDYVPNASSQNLNCEGDVCVADPDQF 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00967 725 CDD NT_PAP_TUTase 62 217 - -
Phco7g00967 725 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 370 496 IPR011068 GO:0003723|GO:0016779|GO:0031123
Phco7g00967 725 Pfam Poly(A) polymerase predicted RNA binding domain 432 502 IPR007010 GO:0003723|GO:0043631
Phco7g00967 725 Pfam Poly(A) polymerase predicted RNA binding domain 370 427 IPR007010 GO:0003723|GO:0043631
Phco7g00967 725 MobiDBLite consensus disorder prediction 533 555 - -
Phco7g00967 725 MobiDBLite consensus disorder prediction 560 576 - -
Phco7g00967 725 SUPERFAMILY PAP/OAS1 substrate-binding domain 218 367 - -
Phco7g00967 725 MobiDBLite consensus disorder prediction 499 576 - -
Phco7g00967 725 MobiDBLite consensus disorder prediction 500 517 - -
Phco7g00967 725 FunFam Putative poly(A) polymerase gamma 197 365 - -
Phco7g00967 725 FunFam Nuclear poly(A) polymerase 4 369 485 - -
Phco7g00967 725 Gene3D Poly(A) polymerase predicted RNA binding domain 369 485 - -
Phco7g00967 725 Pfam Nucleotidyltransferase domain 96 172 IPR002934 GO:0016779
Phco7g00967 725 Gene3D - 23 365 - -
Phco7g00967 725 FunFam Poly(A) polymerase alpha, putative 55 211 - -
Phco7g00967 725 MobiDBLite consensus disorder prediction 1 23 - -
Phco7g00967 725 Pfam Poly(A) polymerase central domain 23 366 IPR007012 GO:0043631|GO:1990817
Phco7g00967 725 MobiDBLite consensus disorder prediction 1 28 - -
Phco7g00967 725 PANTHER POLY A POLYMERASE 11 550 - -
Phco7g00967 725 Gene3D Beta Polymerase, domain 2 55 211 IPR043519 -
Phco7g00967 725 SUPERFAMILY Nucleotidyltransferase 20 216 IPR043519 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00967 Phco-Chr7 7855434 7860110 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00967 7 7855434 7860110 Phco7g00967 7 7855434 7860110 ECH