Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00961 ATGAGCGTTTCACATTTCGCGGTTCTATCGTGTTGTCGTCCACTCGTCCCTTCATTTTCGCGTGCTTCAGGGCTTCGTTCTCGCATACGCTGTTGTACTACTTTAACTGCTACTTCCACAGAGACTCCCACTCCAACCTCCGTAAAGAAACGAGTAGTGTCGGGGGTTCAGCCTACGGGCTCAATTCACCTTGGAAACTATTTTGGAGCTATCAAGAATTGGGTTGCCCTTCAGAATGTTTATGAAACTCTTTTCTTCATTGTGGACCTGCATGCGATCACATTACCATACGACACCCAACAATTATCTAAGGCTACAAGGTCAACTGCTGCTATTTACCTAGCATGTGGAGTGGATCCTTCCAAGGCTTCAGTGTTTGTACAGTCTCATGTTCGTGCACATGTTGAATTGATGTGGCTGCTAAGTTCCACGACACCTATTGGTTGGCTGAACAAAATGATACAGTTTAAAGAGAAATCTCGCAAGGCGGGAGATGAAGAAGTTGGGGTTGCTCTTTTGACTTATCCTGTTCTGATGGCTTCTGATATACTTCTATATCAGTCTGATCTTGTCCCTGTTGGTGAAGATCAAAAGCAGCATTTGGAGTTGACTCGTGACTTGGCTGAACGGGTTAATAATTTATATGGAGGGAGAAAGTGGAAGAAATTAGGGGGCCGAGGAGGTACTATATTTAAGGTTCCAGAGCCCCTTATACCTCCAGCTGGTGCCAGGATAATGTCCCTAACAGATGGCCTGTCCAAGATGTCAAAGTCTGCACCTTCTGATCAATCCAGAATCAATATTCTTGATCCTAAAGATCTTATAGCAAACAAGATCAAACGTTGCAAAACTGATTCATTTCCAAGCTTGGAATTTGGAAACTCTGAGAGGCCTGAATGTAATAATCTTCTTTCCATATACCAGCTTGCTTCAGGAAAGGCGAAAGAGGAAGTTGTTCAGGAATGCCAAAATATGAACTGGGGCACTTTCAAAATCCTTTTAACGGATGCCTTGATTGATCATTTACATCCCATTCAGGTTCGCTATAAGGAAATCATGTCCGATTCAGGTTATTTAGATGAAGTATTGGCACATGGAGCTAGAAATGCAGCAGAAATAGCAGATACAACACTTCATAATGTTTATCAAGCAATGGGATTTTTGAAGAGACAGTGA 1176 0.4269 MSVSHFAVLSCCRPLVPSFSRASGLRSRIRCCTTLTATSTETPTPTSVKKRVVSGVQPTGSIHLGNYFGAIKNWVALQNVYETLFFIVDLHAITLPYDTQQLSKATRSTAAIYLACGVDPSKASVFVQSHVRAHVELMWLLSSTTPIGWLNKMIQFKEKSRKAGDEEVGVALLTYPVLMASDILLYQSDLVPVGEDQKQHLELTRDLAERVNNLYGGRKWKKLGGRGGTIFKVPEPLIPPAGARIMSLTDGLSKMSKSAPSDQSRINILDPKDLIANKIKRCKTDSFPSLEFGNSERPECNNLLSIYQLASGKAKEEVVQECQNMNWGTFKILLTDALIDHLHPIQVRYKEIMSDSGYLDEVLAHGARNAAEIADTTLHNVYQAMGFLKRQ 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00961 391 Hamap Tryptophan--tRNA ligase [trpS]. 49 388 IPR024109 GO:0004830
Phco7g00961 391 PRINTS Tryptophanyl-tRNA synthetase signature 254 264 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Phco7g00961 391 PRINTS Tryptophanyl-tRNA synthetase signature 189 210 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Phco7g00961 391 PRINTS Tryptophanyl-tRNA synthetase signature 112 131 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Phco7g00961 391 PRINTS Tryptophanyl-tRNA synthetase signature 62 78 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Phco7g00961 391 Pfam tRNA synthetases class I (W and Y) 50 342 IPR002305 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Phco7g00961 391 FunFam Tryptophan--tRNA ligase 245 355 - -
Phco7g00961 391 NCBIfam tryptophan--tRNA ligase 49 387 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Phco7g00961 391 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 58 67 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Phco7g00961 391 CDD TrpRS_core 51 339 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Phco7g00961 391 PANTHER TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL 24 388 - -
Phco7g00961 391 Gene3D - 247 357 - -
Phco7g00961 391 Gene3D HUPs 52 386 IPR014729 -
Phco7g00961 391 FunFam Tryptophan--tRNA ligase, chloroplastic/mitochondrial 52 268 - -
Phco7g00961 391 SUPERFAMILY Nucleotidylyl transferase 50 387 - -
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00961 7 7801733 7816905 Phco7g00961 7 7801733 7816905 ECH