Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00855 ATGGCCGTTTTGGTGGTTACTCTTCCGTTGTCCACGGAAGCATTCAAGTCAAACCCGTTTTTGTCCAAATCCAAAACCGCATCTTTAAGCCTTGGATTGAATCAAAGCTTATCACTCCCCTCCTTTGCCCAACTTGTCTCTTTCTTCAAAAGCTTATTTTGGTTGCATTTGCATATGAAGAACCAAACACGTTTCATTGATCAGAGAACAATAATACTTCATCATAATCATAGCATGGAGCTGAGACATGAGAAGCTAGTGAGGTTCTCCAATGATGGAAAGCAGACTCTTGAACTTCCTTGGGAAAAGCTAGACTCTCACAAACACCATGAGAAGGCATTCACAGTCTATCCAGAATGCAAAATGAGTATTGGTGACAAGAACAGAATGAGTATCAAAATTCCCTCGCTTGCCAAGTTTAAGGTTTTCCCAGAAAACCATGAGCCATGGAAGAAGAGAATTCTTGATCCTGGCAGTGATGCAATTTTGGAGTGGAACCGGGCATTCCTGTTTTCTTGCATTCTGGCACTGTTTGTTGATCCACTGTTTTTCTACCTTCCATCAGTAGCAAATGATGGGAAATCATGGTGTATGGCTATTGATTTGAATATAGGAATTGTTGTGACATGTTTCCGGACATTTGCTGATGTGTTCTATCTGCTCAACATGGTCATCAAGTTCAGAACTGCCTATGTATCCCCGAGTTCTAGGGTGTTTGGAAGGGGTGAGCTTGTTATGGATCCTAGGCTGATTGCAAGGCGATATTTGAGATCAGAGTTCTTCCTAGATCTTGTTGCTACACTGCCTCTTCCCCAGATTGTAATTTGGTTTATTATGCCAGCAATCAGAAGCTCCCATGCTGATCATACCAACAATGCACTTGTACTTATTGTTCTGCTTCAATATGTCCCCAGATTATATTTGATTTTCCCATTAAGTTCTCAGATTATTAAAGCCACTGGTGTAGTTACAAAGACAGCTTGGGCTGGGGCTGCTTACAATCTTTTACTTTACATGCTAGCTAGTCATGTGTTGGGGGCATCATGGTATTTGTTATCAATTGAAAGGCATGCTACTTGCTGGAAATCTGAATGCAGAAATGAAAGCCTCCCTGTAAAATGTGCTCTTAAGTACTTAGATTGCAGTACTTTAAACCACGATGATCGCATGAAATGGGTAAACAATACTTCTGTGTTTGGTAACTGCAATCCTCAAAATAGCACCAATTTCAACTATGGAATTTTCGTAAGTGCAGTGGAAAATAATGTTATCTCCTCTGTGTTCATAGAGAAGTATCTCTATTGTCTGTGGTGGGGCTTGCAGAACTTAAGTTCCTATGGCCAGGGTTTGACCACAAGCACATTCGTTTGGGAAACTGCATTTGCAATACTCATAGCTATTCTGGGTCTGGTTTTGTTTGCCCACTTAATTGGTAACATGCAGACCTATTTGCAATCTATTACTGTGAGGCTTGAAGAATGGAGGCTCAAGAGACGTGACACTGAAGAGTGGATGAGTCACCGTCAGCTCCCACAAAATCTGAGAGAGCGTGTCCGAAGATTTGTTCAATACAAGTGGCTTGCAACTCGCGGGGTTGATGAAGAAACAATCCTACGTGGCCTGCCTATTGACCTACGTAGAGATATCCAACGCCATCTTTGCTTGGACCTTGTTCGACGTGTTCCTTTTTTCTCGCAAATGGATGATCAGCTACTTGATGCAATATGCGAGAGATTGGTATCATCCTTGAGTACTCAAGGCACGTACATAGTCAGAGAAGGAGACCCGGTTACAGAGATGCTCTTTATCATCAGAGGGAGACTTGAAAGTTCAACAACAAATGGAGGCAGAACTGGTTTCTTCAACTCCATTACCTTGAGGCCTGGTGATTTCTGTGGAGAAGAGCTACTTGCTTGGGCACTGCTTCCAAAATCCACTCTCAACTTGCCTTCTTCTACGAGAACTGTTAAAGCCCTTGTAGAAGTTGAAGCCTTTGCACTAAGAGCAGAAGATCTTAAATTTGTGGCCAATCAGTTTAGACGTCTCCACAGCAAGAAGTTACAGCACACTTTCCGTTTCTACTCTCACCATTGGAGGACATGGGCAACATGCTTCATTCAGGCTGCTTGGCGCCGGTTCAAGAAGAGAATGTTTGCGAAGAGCCTTAGCTTGAGGGAATGCCAGTCCTTCAATCACGATGAACATAATGAAGAAGAACACAGTGCAGTGACTTCAAGCACTGCACATGTAAAACAAAACTTAGGTGTCACTATACTGGCTTCAAGGTTTGCTGCAAACACAAAGAGAGGAGTTCAGAAGATCAAGGATGTAGAGCTGCCCAAGTTGCAAAAGCCTGAAGAGCCAGACTTTTCAGTAGAGCCTTATGATGATTAG 2394 0.4265 MAVLVVTLPLSTEAFKSNPFLSKSKTASLSLGLNQSLSLPSFAQLVSFFKSLFWLHLHMKNQTRFIDQRTIILHHNHSMELRHEKLVRFSNDGKQTLELPWEKLDSHKHHEKAFTVYPECKMSIGDKNRMSIKIPSLAKFKVFPENHEPWKKRILDPGSDAILEWNRAFLFSCILALFVDPLFFYLPSVANDGKSWCMAIDLNIGIVVTCFRTFADVFYLLNMVIKFRTAYVSPSSRVFGRGELVMDPRLIARRYLRSEFFLDLVATLPLPQIVIWFIMPAIRSSHADHTNNALVLIVLLQYVPRLYLIFPLSSQIIKATGVVTKTAWAGAAYNLLLYMLASHVLGASWYLLSIERHATCWKSECRNESLPVKCALKYLDCSTLNHDDRMKWVNNTSVFGNCNPQNSTNFNYGIFVSAVENNVISSVFIEKYLYCLWWGLQNLSSYGQGLTTSTFVWETAFAILIAILGLVLFAHLIGNMQTYLQSITVRLEEWRLKRRDTEEWMSHRQLPQNLRERVRRFVQYKWLATRGVDEETILRGLPIDLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLSTQGTYIVREGDPVTEMLFIIRGRLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLPKSTLNLPSSTRTVKALVEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWATCFIQAAWRRFKKRMFAKSLSLRECQSFNHDEHNEEEHSAVTSSTAHVKQNLGVTILASRFAANTKRGVQKIKDVELPKLQKPEEPDFSVEPYDD 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00855 797 SMART cnmp_10 563 694 IPR000595 -
Phco7g00855 797 Gene3D Jelly Rolls 561 681 IPR014710 -
Phco7g00855 797 PRINTS EAG/ELK/ERG potassium channel family signature 432 449 IPR003938 GO:0005249|GO:0006813|GO:0016020
Phco7g00855 797 PRINTS EAG/ELK/ERG potassium channel family signature 526 533 IPR003938 GO:0005249|GO:0006813|GO:0016020
Phco7g00855 797 PRINTS EAG/ELK/ERG potassium channel family signature 223 232 IPR003938 GO:0005249|GO:0006813|GO:0016020
Phco7g00855 797 PRINTS EAG/ELK/ERG potassium channel family signature 458 469 IPR003938 GO:0005249|GO:0006813|GO:0016020
Phco7g00855 797 PRINTS EAG/ELK/ERG potassium channel family signature 476 485 IPR003938 GO:0005249|GO:0006813|GO:0016020
Phco7g00855 797 SUPERFAMILY Voltage-gated potassium channels 160 485 - -
Phco7g00855 797 Gene3D Helix hairpin bin 491 554 - -
Phco7g00855 797 SUPERFAMILY cAMP-binding domain-like 493 685 IPR018490 -
Phco7g00855 797 Gene3D - 171 489 - -
Phco7g00855 797 FunFam Cyclic nucleotide-gated ion channel 1 561 679 - -
Phco7g00855 797 FunFam Cyclic nucleotide-gated ion channel 1 490 554 - -
Phco7g00855 797 ProSiteProfiles cAMP/cGMP binding motif profile. 563 646 IPR000595 -
Phco7g00855 797 Pfam Ion transport protein 165 490 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Phco7g00855 797 CDD CAP_ED 563 694 IPR000595 -
Phco7g00855 797 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 146 790 - -
Phco7g00855 797 Pfam Cyclic nucleotide-binding domain 586 674 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00855 Phco-Chr7 6782417 6787065 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00855 7 6782417 6787065 Phco7g00855 7 6782417 6787065 ECH