Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00787 ATGGCTGCTACTCCTTCTTCTACATACCCTTTCGGAGTTCCTTTACACTCCCTTGGCCGCAGAGTGGATTGCTCAGCCTCCCTGTTCCCCCTCCACGTGGAACTCTCCACAATTTCTTTGTCACCTCGTTCTACTTCGAAGGGATTAGTTGATCGAGTGTGTGCACAGCTTGATAGTGATGACTACTACTGGGAGAAAGTTCCAACACCCATTCTTGATATGGTTGAAAACCCTCTTTACTTGAAGAACTTATCTCTTAAGGAACTGAATCAACTAGCAGTTGAAATTCGTTCAGAATTGTCTTCTATTATGTCAGGTACACAAATATCACCAAAAGCAAGTATGGCAGTGGTGGAGCTGACAGTTGCAATACATCATGTTTTCAATGCTCCAGTGGACAGAATATTGTGGGATGTTGGGGATCAAACATATGCACATAAGATTCTTACAGGAAGGCGATCTCTCATGACAACAATGAAAAGAAAGAACGGTCTCTCTGGTTTTACTTCCCAATTTGAGAGTGAATATGATGCATTTGGTGCAGGTCATGGATGCAACAGTATTTCCGCTGGACTTGGCATGGCAGTTGCCCGGGATATCAAGGGCAGGCAAGAACGTGTAGTTGCAGTTATCAGCAATTGGACAACTATGGCTGGTCAGGCATATGAGGCAATGAGCAATGCAGGATACTTGGACTCAAATATGGTTGTGATTTTGAATGATAGTCGTCACTCTTTACTTCCAAAAATCGAGGAGGGTCCAAAGACATCTGTCAATGCCCTATCTAGTACCCTGAGCAAGCTCCAGTCCAGTAAATCTTTCCGAAGGTTTAGAGAAGCTGCCAAGGGTGTTACAAAACGAATTGGTAGAGGTATGCATGAGTTGGCGGCTAAAGTTGATGAATATGCTCGTGGTATGGTAGGTCCCTTGGGTTCTACTCTTTTTGAGGAGCTTGGGTTGTACTACATAGGCCCAGTGGATGGACACAATATTGAGGATCTGATATGTGTTCTGCAAGAAGTTGCTTCCCTGGATTCAATGGGACCCGTCTTGGTACATGTGATAACTGATGAAAATCAGGGAGATGAAAACAATCAGAAAAGTGATATAACAAATAGGCAACAAGATGGTGGCATTTCTCGTGATCCTTTTAAATATGATTCGTTAGATAATGTTGTTCGGCCTCAAACATATGGCGATTGCTTTGTGGAGACTTTGGTTGCAGAAGCAGAGAAAGACAAAGATATTGTGGTTGTTCATGCTGGAATAGCGATGGAGTCATCCCTTGAACTGTTTCGGGGGAAATTTCCAGATAGGTTTTTTGACGTGGGAATGGCTGAGCAACATGCAGTCACCTTTGCTTCTGGTTTGGCATGTGGTGGATTGAAGCCATTTTGCATTATACCTTCTTCCTTTCTGCAAAGAGCCTATGATCAGGTGGTACACGATGTTGATCAACAGAGAATTCCAGTGCGCTTTGTCATTACAAGCGCAGGATTGGTAGGTTCTGATGGTCCCCTCCAATGTGGAGCTTTTGATATAACCTTTATGTCCTGCTTACCAAACATGATTGTCATGGCACCATCTGATGAGGTTGAACTCATGCACATGGTAGCTACTGCTACTCATATCAATAATCAACCGGTCTGCTTTCGGTATCCCAGGGGTGCCCTGGTTGGGAAAGGCTACAATGTAGGCGATAGAATCCCCATCAAGATAGGGAGAGGAAGAGTTCTTGTTGAGGGTAAAGATGTTGCTTTCCTAGGATACGGATCGATGGTTCAGAACTGCCTATTGGCTCATTCACTCCTTGCAAAACTTGGCATTGAGGTGACTGTTGCTGATGCAAGGTTCTGCAAGCCCCTTGACATCAAACTTCTGAGGCAGCTTTGTAAACATCACTCTTTTCTAATCACTGTCGAGGAAGGATCTATTGGAGGATTTGGTTCCCATGTTGCCGAGTTTATTGCAGTTAATGGACTACTCGATGGAAGAATTAAGTGGCGACCAATTGTCTTACCTGACAGATATATTGAGCATGCATCACCAAATGAACAGCTTGACGAAGCGGGTTTGAGTGGACACCACATTGCTGCCACGGCATTGAGTTTGCTAGGCCGTACACGGGAAGCTCTGCAGTTCATGTGTTCCTCCTGA 2157 0.4441 MAATPSSTYPFGVPLHSLGRRVDCSASLFPLHVELSTISLSPRSTSKGLVDRVCAQLDSDDYYWEKVPTPILDMVENPLYLKNLSLKELNQLAVEIRSELSSIMSGTQISPKASMAVVELTVAIHHVFNAPVDRILWDVGDQTYAHKILTGRRSLMTTMKRKNGLSGFTSQFESEYDAFGAGHGCNSISAGLGMAVARDIKGRQERVVAVISNWTTMAGQAYEAMSNAGYLDSNMVVILNDSRHSLLPKIEEGPKTSVNALSSTLSKLQSSKSFRRFREAAKGVTKRIGRGMHELAAKVDEYARGMVGPLGSTLFEELGLYYIGPVDGHNIEDLICVLQEVASLDSMGPVLVHVITDENQGDENNQKSDITNRQQDGGISRDPFKYDSLDNVVRPQTYGDCFVETLVAEAEKDKDIVVVHAGIAMESSLELFRGKFPDRFFDVGMAEQHAVTFASGLACGGLKPFCIIPSSFLQRAYDQVVHDVDQQRIPVRFVITSAGLVGSDGPLQCGAFDITFMSCLPNMIVMAPSDEVELMHMVATATHINNQPVCFRYPRGALVGKGYNVGDRIPIKIGRGRVLVEGKDVAFLGYGSMVQNCLLAHSLLAKLGIEVTVADARFCKPLDIKLLRQLCKHHSFLITVEEGSIGGFGSHVAEFIAVNGLLDGRIKWRPIVLPDRYIEHASPNEQLDEAGLSGHHIAATALSLLGRTREALQFMCSS 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00787 718 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 395 563 - -
Phco7g00787 718 Pfam Transketolase, C-terminal domain 574 697 IPR033248 -
Phco7g00787 718 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 71 706 IPR005477 GO:0008661|GO:0016114
Phco7g00787 718 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 574 706 - -
Phco7g00787 718 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 72 356 IPR005477 GO:0008661|GO:0016114
Phco7g00787 718 MobiDBLite consensus disorder prediction 358 378 - -
Phco7g00787 718 NCBIfam 1-deoxy-D-xylulose-5-phosphate synthase 74 703 IPR005477 GO:0008661|GO:0016114
Phco7g00787 718 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 69 458 IPR029061 -
Phco7g00787 718 SUPERFAMILY TK C-terminal domain-like 570 705 IPR009014 GO:0003824
Phco7g00787 718 MobiDBLite consensus disorder prediction 357 381 - -
Phco7g00787 718 CDD TPP_DXS 113 361 IPR005477 GO:0008661|GO:0016114
Phco7g00787 718 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 47 712 IPR005477 GO:0008661|GO:0016114
Phco7g00787 718 Gene3D - 396 564 - -
Phco7g00787 718 Gene3D - 64 363 - -
Phco7g00787 718 CDD TPP_PYR_DXS_TK_like 402 555 - -
Phco7g00787 718 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 395 584 IPR029061 -
Phco7g00787 718 SMART Transket_pyr_3 396 561 IPR005475 -
Phco7g00787 718 Gene3D - 574 705 IPR009014 GO:0003824
Phco7g00787 718 Pfam Transketolase, pyrimidine binding domain 397 558 IPR005475 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00787 Phco-Chr7 6099116 6105707 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00787 7 6099116 6105707 Phco7g00787 7 6099116 6105707 ECH