Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00740 ATGAAGCAAGCTTCGTCCGAGGCAGTTCCTTCGCTATCTTCCACGCCGTCGTTCACGGAGGCAGCGACATCGTCGTCATCCTCCGCCGCTGCGGCGGATGACCTGGCGGTGGGGTCGCGGGACGGTGGCGGCGGCGCTCAGGAGACGGTGGCGGTGGATCGGCGAGGCGAGTACTCGGCCGTGTGCCGATGGACGGTGCACAATTTCCCGAGAATAAAGGCTAGGGCACTGTGGAGCAAATACTTCGAGGTAGGCGGTTACGATTGTCGGTTGCTAATATACCCCAAGGGTGACTCCCAGGCGCTTCCAGGGTACATCTCCATCTACCTCCAAATCATGGACCCTCGCGGCACCTCCTCCTCAAAATGGGACTGTTTCGCGAGTTATCGCTTGGCAATCGTGAACGTCGCGGACGATTCCAAAACCATTCACCGCGATTCCTGGCACCGATTCTCCAGTAAGAAGAAATCGCACGGTTGGTGCGATTTCACGCCCTCTTCCACTGTTTTCGACCCCAAATTGGGATACCTATTCAATACGGATTCCGTTTTGATCACTGCGGATATTCTCATTCTCAATGAGTCCGTTAATTTCACGCGGGACAACAATGAGTTGCAGTCCTCGTCTTCGTCCTCGTCCTCGTCAAGTTCCTCCGTTGTTGCGGGTCCCGTGTCTGATGTGTTGAGTGGTAAGTTCACTTGGAAAGTGCATAATTTCAGTCTGTTTAAGGAGATGATCAAGACACAGAAGATAATGAGCCCGGTGTTCCCTGCGGGGGAGTGTAATTTGAGAATAAGTGTGTACCAGAGCTCTGTGAATGGGGTTGAGTATTTGTCTATGTGTTTGGAGAGCAAGGACACGGATAAGACTGTGGTGTTATCTGATAGGAGTTGTTGGTGTTTGTTTAGGATGTCTGTGTTGAACCAGAAGCCCGGTTCCAATCACATGCATAGGGATTCTTATGGCCGGTTTGCGGCTGATAATAAGAGCGGCGACAATACCAGCTTGGGATGGAACGATTACATGAAGATGTCGGATTTCATCGGTGTGGATTCCGGGTTCTTGGTGGATGACACCGCGGTTTTTAGCACTTCATTTCATGTGATCAAGGAGTTTAGCAGCTTCTCCAAGAATGGTTCTGTGATTGCCGGGAGAAGTGGGAGTGGTGCTAGGAAGTCTGATGGGCATATTGGAAAGTTCACTTGGAGGATCGAGAATTTTACTAGGTTGAAGGATTTGCTTAAGAAGAGGAAAATCACGGGTCTGTGCATTAAGAGCCGGAGGTTTCAGATTGGTAATAGGGATTGTCGACTTATTGTTTATCCTCGAGGGCAGTCTCAGCCACCATGCCACCTTTCAGTGTTTCTTGAAGTTACAGATTCAAGAAATACTTCCAGTGATTGGAGTTGTTTTGTCAGCCATCGTTTATCAGTTGTGAACCAGAAGATGGAGGATAAATCTGTCACCAAGGAGTCTCAGAACCGCTACTCGAAAGCTGCAAAGGATTGGGGTTGGCGTGAATTTGTGACACTCACCAGTCTCTTTGATCAAGATTCAGGTTTTCTTGTCCAGGACACTGTCATATTCTCTGCTGAAGTGCTTATATTGAAAGAGACATCAATAATGCAGGATTTTACTGAACATGATTCTGAGTTAAGCAGCAGTGGCTCTCCTCTGGACAATTCTGGGAAAAGAAGTTCATTTACATGGAAAGTTGAGAATTTCCTGTCATTCAAGGAAATAATGGAGACACGAAAAATCTTCAGTAAATTCTTTCAAGCTGGTGGATGTGAACTTCGAATTGGTGTATATGAGTCGTTTGACACTATATGTATTTATTTAGAGAGTGACCAGGCAGTTGGTAGTGATCCGGATAAAAATTTCTGGGTCAGATACAGGATGGCTGTTGTGAATCAAAAGAACCCAGCCAAGACAGTGTGGAAAGAATCTTCTATCTGCACAAAGACATGGAATAATTCTGTTTTGCAATTCATGAAGGTGTCTGATATGTTAGAAGCGGATGCAGGATTTCTTGTACGTGACACTGTTGTTTTTGTATGTGAAATATTGGATTGCTGTCCTTGGTTTGAGTTTTCCGATTTAGAGGTTTTAGCATCAGAGGATGATCAGGACGCATTGACAACTGACCCTGATGAGCTCATTGATTCTGAAGACAGTGAAGGGATAAGTGGAGATGAGGAAGATATTTTCAGAAATCTTCTTTCCAGAGCTGGATTCCATTTAACATATGGAGATAATCCTTCTCAGCCACAAGTTACTTTAAGGGAGAAACTTCTAATGGATGCTGGTGCAATTGCAGGGTTTCTGACTGGTCTTCGAGTCTATCTTGATGATCCTGCAAAAGTTAAGCGCCTGCTTCTACCTACCAAGCTGTCTGGTAGTTGTGATGGGAAGAAGGCCACCAAAGCTGATGAATCTTCCCCAAGTTTGATGAATTTGCTGATGGGAGTTAAAGTTTTGCAGCAAGCTATCATAGATTTACTATTAGATATAATGGTTGAGTGCTGCCAACCTTCTGAAGTAGGTCCTGTTGCTGATTCTGTTGATGCATGTTCTAAACCTTCTCCAGATGGAAGTGGCGCTGCTAGTCCTCTTGAGTGTGAAAGAGAAAGTGGATCAATGGAGTCTGCACGAGTTCCTGTTAATGAGAGACTGGATTCTGTTGTTGAAGAAAGCAGTAATACATCTGCTGTGCAGAGCTCTGATTTAAAAGGGAATGGTGGTATTCAGGAAAAACCTGTTCCTGGACATCCCATTTGTCCACCAGAGACATCTGCCACTGCTTCAGAAAATGCATCCTTTCGGTCAAAGACCAAGTGGCCAGAACAGTCTGAGGAGCTTTTAGGTTTGATTGTAAACTCACTAAGAGCTTTGGATGGAGCTGTTCCTCAAGGCTGTCCAGAACCAAGACGTCGGCCTCAGTCTGCTCAAAAAATTACTCTTGTATTGGACAAAGCTCCTAAGCATTTGCAAGCTGACCTAGTTGCTCTGGTACCTAAATTGGTTGAGCAGTCAGAACACCCACTTGCTGCCTATGCACTTCTTGAGCGTCTTCAAAAGACAGATGCTGAACCTTCTTTGCGAATACCAGTTTTTGGGGCTCTTAGTCAATTGGAGTGTGGTAGTGAAGTGTGGGAACGCATTCTGTTTCAGTCATTTGAGCTTTTGACAGACTCAAATGACGAACCCCTTGCTACAACAGTAGATTTTATATTCAAAGCGGCATCTCAATGTCAACACCTCCCTGAAGCAGTTAGGTCTGTTCGTGTCAGGCTGAAAAATCTAGGTCTTGAGGTGTCGCCTTGTGTCCTTGACTTTTTGAGTAAGACTATAAATAGTTGGGGGGATGTTGCTGAAACCATACTTAGGGACATTGATTGTGATGATGACTATGGTGACAATTGCTCAGCTCTGCCGTGTGGGATTTTCTTATTTGGTGAACATGGCACTTCTCCCAGTGGGCTGCACGTGATTGATGAGCAGGCTTATCAAGCTAGTCGTCATTTTTCTGATATTTATATACTGTTTGAGATGTTATCTATTCCTTGCCTTGTTGCTGAAGCTTCTCAAACATTTGAGAGAGCTGTAGCTCGAGGTGCAATAAGTGCTCAGTCTGTAGCCCTGGTATTGCAAAGCCGTCTTTCCCAAAGATTGAACAATAATGGAAGATATGTTTCTGAAAATTTCCAACATACAGATGGTGCTATAGAGGGAGATGCCTGTGAGCAATTGGGAGTTCAGAGGGATGATTATACTTCTGTTCTTGGCCTTGCCGAAAATTTGGCCCTCTCTAGAGATCCATGCGTGAAAGAATTTGTTAAACTGCTCTACATGATAATGTTTAGATGGTTTGCCAATGAATCTTATAGAGGGAGGATGTTGAAGAGGCTTGTTGACCGTGCCACTAGCAATACTGACAATGGTCGTGAAGTAGATTTTGATTTGGATATATTGGTTACTTTGGTCTGCGAGGAGCAGGAGTTTATCAGGCCTGCTTTGAGTATGATGCGTGAAGTTGCTGAACTGGCAAATGTTGATAGGGCTGCACTATGGCACCAGTTGTGCGCCAGTGAGGATGAAATTATTCGTGTTCGTGAAGAAAGCAAAACTGAGATTTCTAATATGGCTAAGGAAAAAGCTATTATATCACAAAAGCTGAGTGAATCTGAAGTGACAAACAATCGTTTGAAGTCTGAAATGAGGGCTGAGATGGATCGATTTTCTCGGGAAAAGAAGGAATTAGCTGAACAAGCTCAAGAAGTTGAGAGTCAGCTTGAATGGCTCCGCTCAGAACGGGATGATGAAATTGCAAAGCTCTCTGCAGAGAAGAAAGCTCTTCATGACCGTTTACATGATGCAGAGACACAACTTTCTCAATTGAAGTCTCGGAAACGCGATGAATTAAAGAAAGTAGTCAAGGAGAAAAATGCTCTAGCTGAAAGATTGAAGAATGCTGAAGGTGCTCGCAAAAGATTTGATGAAGAACTGAAAAGATTTGCGACAGAGAATGTGACTCGTGAGGAAATTCGGCAATCACTCGAAGATGAAGTCCGTAGATTGACTCAAACTGTTGGGCAAACTGAAGGGGAAAAGCGCGAGAAGGAAGAGCAGGTTGCTAGGTGTGAAGCATATATTGATGGCATGGAATCAAAGTTGCAAGCTTGCCAGCAATATATTCACACACTTGAGGCCTCACTCCAGGAGGAAATGTCAAGACATGCCCCTCTATATGGCGCTGGTCTGGAGGCTTTGTCATTGAAAGAGTTGGAAACACTATCACGTATTCATGAAGATGGGCTTAGGCAGATCCATGCCATTCAACAGCGTAAAGGGAGTCCTGCTGGGAGCCCTCTTGTGAGCCCCCATGCTCTCCCTCACACCCATGGTTTGTATCCAGCTGCCTCGCCCCCTATGGCTGTGGGACTGCCTCCCTCTATCATCCCAAATGGTGTAGGGATCCACAGCAACGGCCATGTGAATGGTGCAGTTGGACCCTGGTTTAACCACTCTTGA 5034 0.4525 MKQASSEAVPSLSSTPSFTEAATSSSSSAAAADDLAVGSRDGGGGAQETVAVDRRGEYSAVCRWTVHNFPRIKARALWSKYFEVGGYDCRLLIYPKGDSQALPGYISIYLQIMDPRGTSSSKWDCFASYRLAIVNVADDSKTIHRDSWHRFSSKKKSHGWCDFTPSSTVFDPKLGYLFNTDSVLITADILILNESVNFTRDNNELQSSSSSSSSSSSSVVAGPVSDVLSGKFTWKVHNFSLFKEMIKTQKIMSPVFPAGECNLRISVYQSSVNGVEYLSMCLESKDTDKTVVLSDRSCWCLFRMSVLNQKPGSNHMHRDSYGRFAADNKSGDNTSLGWNDYMKMSDFIGVDSGFLVDDTAVFSTSFHVIKEFSSFSKNGSVIAGRSGSGARKSDGHIGKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQIGNRDCRLIVYPRGQSQPPCHLSVFLEVTDSRNTSSDWSCFVSHRLSVVNQKMEDKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDTVIFSAEVLILKETSIMQDFTEHDSELSSSGSPLDNSGKRSSFTWKVENFLSFKEIMETRKIFSKFFQAGGCELRIGVYESFDTICIYLESDQAVGSDPDKNFWVRYRMAVVNQKNPAKTVWKESSICTKTWNNSVLQFMKVSDMLEADAGFLVRDTVVFVCEILDCCPWFEFSDLEVLASEDDQDALTTDPDELIDSEDSEGISGDEEDIFRNLLSRAGFHLTYGDNPSQPQVTLREKLLMDAGAIAGFLTGLRVYLDDPAKVKRLLLPTKLSGSCDGKKATKADESSPSLMNLLMGVKVLQQAIIDLLLDIMVECCQPSEVGPVADSVDACSKPSPDGSGAASPLECERESGSMESARVPVNERLDSVVEESSNTSAVQSSDLKGNGGIQEKPVPGHPICPPETSATASENASFRSKTKWPEQSEELLGLIVNSLRALDGAVPQGCPEPRRRPQSAQKITLVLDKAPKHLQADLVALVPKLVEQSEHPLAAYALLERLQKTDAEPSLRIPVFGALSQLECGSEVWERILFQSFELLTDSNDEPLATTVDFIFKAASQCQHLPEAVRSVRVRLKNLGLEVSPCVLDFLSKTINSWGDVAETILRDIDCDDDYGDNCSALPCGIFLFGEHGTSPSGLHVIDEQAYQASRHFSDIYILFEMLSIPCLVAEASQTFERAVARGAISAQSVALVLQSRLSQRLNNNGRYVSENFQHTDGAIEGDACEQLGVQRDDYTSVLGLAENLALSRDPCVKEFVKLLYMIMFRWFANESYRGRMLKRLVDRATSNTDNGREVDFDLDILVTLVCEEQEFIRPALSMMREVAELANVDRAALWHQLCASEDEIIRVREESKTEISNMAKEKAIISQKLSESEVTNNRLKSEMRAEMDRFSREKKELAEQAQEVESQLEWLRSERDDEIAKLSAEKKALHDRLHDAETQLSQLKSRKRDELKKVVKEKNALAERLKNAEGARKRFDEELKRFATENVTREEIRQSLEDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQYIHTLEASLQEEMSRHAPLYGAGLEALSLKELETLSRIHEDGLRQIHAIQQRKGSPAGSPLVSPHALPHTHGLYPAASPPMAVGLPPSIIPNGVGIHSNGHVNGAVGPWFNHS 1677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00740 1677 ProSiteProfiles MATH/TRAF domain profile. 59 189 IPR002083 GO:0005515
Phco7g00740 1677 MobiDBLite consensus disorder prediction 854 885 - -
Phco7g00740 1677 Gene3D - 1436 1627 - -
Phco7g00740 1677 MobiDBLite consensus disorder prediction 897 947 - -
Phco7g00740 1677 PANTHER TRAF-LIKE FAMILY PROTEIN 25 1677 - -
Phco7g00740 1677 MobiDBLite consensus disorder prediction 897 913 - -
Phco7g00740 1677 SUPERFAMILY TRAF domain-like 58 197 - -
Phco7g00740 1677 ProSiteProfiles MATH/TRAF domain profile. 397 533 IPR002083 GO:0005515
Phco7g00740 1677 CDD MATH 398 533 IPR002083 GO:0005515
Phco7g00740 1677 MobiDBLite consensus disorder prediction 1 47 - -
Phco7g00740 1677 ProSiteProfiles MATH/TRAF domain profile. 229 366 IPR002083 GO:0005515
Phco7g00740 1677 ProSiteProfiles MATH/TRAF domain profile. 565 689 IPR002083 GO:0005515
Phco7g00740 1677 MobiDBLite consensus disorder prediction 1 32 - -
Phco7g00740 1677 Pfam MATH domain 429 535 IPR002083 GO:0005515
Phco7g00740 1677 Pfam MATH domain 68 191 IPR002083 GO:0005515
Phco7g00740 1677 Pfam MATH domain 578 685 IPR002083 GO:0005515
Phco7g00740 1677 SUPERFAMILY TRAF domain-like 566 690 - -
Phco7g00740 1677 SMART math_3 402 514 IPR002083 GO:0005515
Phco7g00740 1677 SMART math_3 61 169 IPR002083 GO:0005515
Phco7g00740 1677 SMART math_3 234 347 IPR002083 GO:0005515
Phco7g00740 1677 SMART math_3 570 670 IPR002083 GO:0005515
Phco7g00740 1677 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 555 691 IPR008974 GO:0005515
Phco7g00740 1677 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 225 372 IPR008974 GO:0005515
Phco7g00740 1677 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 389 542 IPR008974 GO:0005515
Phco7g00740 1677 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 45 196 IPR008974 GO:0005515
Phco7g00740 1677 CDD MATH 230 362 IPR002083 GO:0005515
Phco7g00740 1677 CDD MATH 63 189 IPR002083 GO:0005515
Phco7g00740 1677 SUPERFAMILY TRAF domain-like 398 539 - -
Phco7g00740 1677 SUPERFAMILY TRAF domain-like 227 372 - -
Phco7g00740 1677 Coils Coil 1400 1509 - -
Phco7g00740 1677 Coils Coil 1517 1544 - -
Phco7g00740 1677 MobiDBLite consensus disorder prediction 931 945 - -
Phco7g00740 1677 CDD MATH 567 689 IPR002083 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00740 Phco-Chr7 5723361 5732356 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00740 7 5723361 5732356 Phco7g00740 7 5723361 5732356 ECH