Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00685 ATGGGTCACGTTGGTTCCAGTACGGATGGCACCAAGGCAGGGATGACCGCCGCGATGATGGACATCGACGGTGACGACGGCTTCGACGACGACCTGGGTGACCTCGACCCGACCAACGCCGGATTCCTCGAAGAATTCGGCGGAGAGGACGTGTTCCGATACCACTGCAAGAAGTTTTCGATGCTGTTCTTTGAGGAGTACGGTCTGATCAGCCACCAAATCAACTCCTATAACCACTACGCCCACGTCGGCCTCCAGAGAACCTTTGATGGCTTCGGCGAACTGGTCGTCACGCCCGGCTTCGACCCTTCCAAGAAGGGAGCTAACGAGCACTACCGTTACGCCTCCGTCAACTTTGGCAAGGTCACGCTAGACAAGCCCATGTTCTGGGGCGGTGAGGCCAACGCGCAGGAGTTTAAGATGCTTCCGCGACACGCGCGGCTTCAGAGGATGACCTACGCTTCGAAAATAAAAATTTTAGTTAAAGTTCAGGTGTATGTTCCGAAGAAGGTTCGGAGTGATAAGTTCAAGACAGGGAAGGAAGAGTTCCTTGACAAGGAGATTCTGAAGGAAGATGAGAGGGAGATCATCATTGGGAGATTGCCTGTCATGGTTAAGTCGGATTTATGTTGGATGAATGGTGAAAAGGATGATTGTGAATTTGACCATGGAGGTTATTTTCTCATCAAGGGTGCCGAGAAGACTTTTATTGCACAGGAGCAACTGTATTTAAAGAGGCTTTGGGTTATGAACAGTCCAGGTTGGATGATTGCCTACAAGTCACAGATGAAGAGAAATAGGATGGTTATTAAACTGGTAGGCAATTCTAGGAATGAAGAAGGGCAGAATGGAGACATGTTTCTTACTGTGTATTTTTTATCAGTTGAGGTTCCTGTGTGGGTATTATTTTTCGCTCTTGGTGTCACATCTGATAAAGATGTTGTAGATCTCATTGGTTGTGACAATGATGATGCCAGAATTCAGAATATTCTCCTTGCGTCTGTTTGTGATGCTGATGAGAAATGTGGAGCATTTCGGAGAGGTAGGAATGCAGTTCAATATTTAGAGAAGTATATAAAAAGTGTCCAATTTCCACCTCCTGAGTCTATTGAGGAGTGCCTTGAAATGTATGTCTTTCCTGGAATTAGCGGCTTAAACAGAAAGGCACGCTTCCTTGCATATATGGTGAAGGGTCTCTTACTGGCTTATACTGGCCGCAGAAAATGCGACAACAGGGATGATTTTCGTAATAAGAGGCTTGAATTGGCCAGTGAGCTTCTTGACCGTGAGTTGAAAGTGCATATAGCTCATGCTCGAAAACGAATGTCAAAGGCATTGCAGAGGGACCTTTATGGAGATAGGGATGTACGCCCAATTGAGCATTATCTTGATGCCTCAATAATTACAAATGGTTTGCAAAGGGCATTTTCAACAGGAGCATGGTCACATCCGTACAAAAGGATGGAAAGGATCTCTGGTGTGGTTGCAAATGTTGGGCGCACTAATCCCTTACAAACCATGGCTGAGCTAAGAAGAGCGAGGCAGCAAGTCCAGTACACAGGAAAAGTTGGGGATGCTAGATATCCGCATCCTTCTCACTGGGGCAAGGTTTGTTTCCTCTCTACCCCAGATGGTGAAAATTGTGGACTAGTAAAAAATATGGCTGTCACAGGACTAGTAAGCACCGATGTATCTAATGCATCTGAATCTATACTGCCTACAATGTTGAATTGTGGAATGGAAGAACTTGTCGATGATACTTCCACTCATCTGGGAAACAAGGACAAAGTCTTCCTAAACGGTGATTGGGTTGGAGTGTGCCCTGATTCCAGTCAGTTTGTGGCTGAGCTACGAAGTGAAAGACGTAAAAATAAACTGCCTCATCAGGTGGAAATCAAGAGAGATCAATCTCAACATGAAGTGCGTATATACTCTGATGCAGGAAGGATTCTACGTCCTCTTTTGGTAGTTGGTAATCTTCTCAGGATTAAAGGATTTAAATCGGACCGCTACTCTTTCCGGACTCTATTGGAAGAAGGTGTGATTGAGCTGATTGGACCTGAAGAAGAGGAAGACTGCTGTACTGCCTGGGGTGTTCAGTATTTATTTGGGAAAGAGGGGAAAAGATCTGTGAAGTACACACACTGTGAACTTGATATGTCATTCTTATTGGGTTTAAGCTGTTCACTTGTCCCATTTGCCAATCATGACCATGCAAGGAGGGTACTCTACCAATCTCAGAAGCACTCCTCACAGGCTATTGGCTTTTCTACTTTAAACCCGAATACCAGAGTTGATACTTTGTCTCATCAGTTACACTATCCCCAGAGGCCCCTTTTTCAAACAATGGCTTCAGATTGTCTTGGAAAACCAACCTATCCATTGGGTCAAAGTAAAATACATCCAAAGGCAGAATTCTATAATGGGCAGAACGCAATTGTGGCTGTCAATGTACATCTGGGATACAATCAAGAGGATTCCTTGGTGATGAACCGAGCGTCATTGCAGCGTGGTATGTTCAGATCTGAGCACATAAGGAGTTACAAATCTGAGATTGATAATAAGGAATCTTCAGAGAAGAAGCGAAAACCTGAAGACATGGTAAATTTTGGAAAGCTACAGAGTAAAATTGGTCGAGTTGATAGCCTTGATGATGATGGCTTTCCATATGTTGGGGCAAACTTGCAAAGTGGTGATATTATTATTGGAAGGTGTGCTGAGTCTGGTGCAGACAATAGTGTAAAGTTAAAGCACACTGAAAGGGGTTATGTGCAAAAGGTTGTGCTGTCTTCAAATGATGAGGGGAAAAATTTTGCGGCAGTTTCATTGAGACAGGTTCGAAGTCCAGTTCTTGGTGACAAGTTCTCCAGTATGCATGGACAAAAGGGTGTTTTGGGATTTCTGGAGTGTCAGGAAAATTTTCCTTTCACCAGACAAGGCATTGTTCCTGATATTGTCATTAATCCGCATGCCTTTCCATCACGACAAACTCCTGGCCAGCTGCTAGAGGCTGCTTTAGGAAAAGGGATTGCTTGTGGTGGTAAACTGAGACATGCTACGCCTTTCTCCACTCCTTCTGTCGATGCCATTACTGACCAACTTCACAGAGCTGGGTTTTCAAGATGGGGAAATGAGAGGGTATACAATGGAAGGACTGGTGAGATGGTCAAATCACTCATTTTTATGGGACCAACATTTTACCAACGTCTGCATCATATGTCTGAAGACAAGGTGAAATTCCGCAACACTGGTCCTGTTCACCCTTTGACCCGACAGCCTGTAGCTGACAGAAAACGATTTGGAGGTATCAAGTTCGGTGAAATGGAACGTGATTGCTTGATAGCTCACGGTGCATCAGCCAACCTGTATGAACGCCTCTTTACACTCAGTGACTCGTCTCAGATTCACATCTGCAGCCGGTGCAAAAATGTTTCAAATGTGATCTTGCGGCCAGTCTCTGGTGGCCGGAAAGTACGAGGACCTTATTGCCGCCACTGTGAATCTGCAGATGACATTGTGGTTGCCCATGTCCCATACGGAGCAAAATTATTATGCCAGGAGCTCTTTAGCATGGGCATAAATCTTAAATTTGAAACCCAACTTTGCTAG 3609 0.4492 MGHVGSSTDGTKAGMTAAMMDIDGDDGFDDDLGDLDPTNAGFLEEFGGEDVFRYHCKKFSMLFFEEYGLISHQINSYNHYAHVGLQRTFDGFGELVVTPGFDPSKKGANEHYRYASVNFGKVTLDKPMFWGGEANAQEFKMLPRHARLQRMTYASKIKILVKVQVYVPKKVRSDKFKTGKEEFLDKEILKEDEREIIIGRLPVMVKSDLCWMNGEKDDCEFDHGGYFLIKGAEKTFIAQEQLYLKRLWVMNSPGWMIAYKSQMKRNRMVIKLVGNSRNEEGQNGDMFLTVYFLSVEVPVWVLFFALGVTSDKDVVDLIGCDNDDARIQNILLASVCDADEKCGAFRRGRNAVQYLEKYIKSVQFPPPESIEECLEMYVFPGISGLNRKARFLAYMVKGLLLAYTGRRKCDNRDDFRNKRLELASELLDRELKVHIAHARKRMSKALQRDLYGDRDVRPIEHYLDASIITNGLQRAFSTGAWSHPYKRMERISGVVANVGRTNPLQTMAELRRARQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNMAVTGLVSTDVSNASESILPTMLNCGMEELVDDTSTHLGNKDKVFLNGDWVGVCPDSSQFVAELRSERRKNKLPHQVEIKRDQSQHEVRIYSDAGRILRPLLVVGNLLRIKGFKSDRYSFRTLLEEGVIELIGPEEEEDCCTAWGVQYLFGKEGKRSVKYTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIGFSTLNPNTRVDTLSHQLHYPQRPLFQTMASDCLGKPTYPLGQSKIHPKAEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLQRGMFRSEHIRSYKSEIDNKESSEKKRKPEDMVNFGKLQSKIGRVDSLDDDGFPYVGANLQSGDIIIGRCAESGADNSVKLKHTERGYVQKVVLSSNDEGKNFAAVSLRQVRSPVLGDKFSSMHGQKGVLGFLECQENFPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGKLRHATPFSTPSVDAITDQLHRAGFSRWGNERVYNGRTGEMVKSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLYERLFTLSDSSQIHICSRCKNVSNVILRPVSGGRKVRGPYCRHCESADDIVVAHVPYGAKLLCQELFSMGINLKFETQLC 1202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00685 1202 FunFam DNA-directed RNA polymerase subunit beta 409 600 - -
Phco7g00685 1202 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 54 1199 - -
Phco7g00685 1202 Pfam RNA polymerase Rpb2, domain 6 728 1099 IPR007120 GO:0003677|GO:0003899|GO:0006351
Phco7g00685 1202 Gene3D - 729 1085 IPR037033 GO:0003677|GO:0003899|GO:0006351
Phco7g00685 1202 CDD RNA_pol_B_RPB2 69 1198 IPR015712 GO:0003899|GO:0006351|GO:0032549
Phco7g00685 1202 Gene3D - 410 596 - -
Phco7g00685 1202 Gene3D - 62 244 - -
Phco7g00685 1202 Gene3D RNA polymerase alpha subunit dimerisation domain 1086 1200 - -
Phco7g00685 1202 FunFam DNA-directed RNA polymerase subunit beta 829 948 - -
Phco7g00685 1202 Pfam RNA polymerase beta subunit 68 458 IPR007644 GO:0003677|GO:0003899|GO:0006351
Phco7g00685 1202 Pfam RNA polymerase Rpb2, domain 7 1101 1199 IPR007641 GO:0003677|GO:0003899|GO:0006351
Phco7g00685 1202 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 62 1196 IPR015712 GO:0003899|GO:0006351|GO:0032549
Phco7g00685 1202 Gene3D RNA polymerase Rpb2, domain 2 252 409 IPR037034 GO:0003677|GO:0003899|GO:0006351
Phco7g00685 1202 Gene3D - 759 948 IPR014724 GO:0003899
Phco7g00685 1202 Pfam RNA polymerase Rpb2, domain 2 277 421 IPR007642 GO:0003677|GO:0003899|GO:0006351
Phco7g00685 1202 Pfam RNA polymerase Rpb2, domain 3 500 557 IPR007645 GO:0003677|GO:0003899|GO:0006351
Phco7g00685 1202 Pfam RNA polymerase Rpb2, domain 5 673 719 IPR007647 GO:0006351
Phco7g00685 1202 FunFam DNA-directed RNA polymerase subunit beta 61 244 - -
Phco7g00685 1202 FunFam DNA-directed RNA polymerase subunit beta 1086 1200 - -
Phco7g00685 1202 Pfam RNA polymerase Rpb2, domain 4 597 657 IPR007646 GO:0003677|GO:0003899|GO:0006351
Phco7g00685 1202 ProSitePatterns RNA polymerases beta chain signature. 952 964 IPR007121 GO:0003677|GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00685 Phco-Chr7 5204765 5210081 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00685 7 5204765 5210081 Phco7g00685 7 5204765 5210081 ECH