Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00678 ATGGCTGTTGTAGTGCCCCTTTCTTCTACCTCTTGTTGTGCTTTCGGTGACACCAATGTTTATGCTATGAGCAATAATGGATTCTTTGGAGGAACCCCATTTGTCAAAATGAAATCTTTGCCAAATGGGTCTTTGGTAAACTGGAAGAAACATGGAAAAAGACAATTGGGTATTGGTGTCTTAGTGACAAGATGTGCCCCTGAAGTGGTTGCAGTAAATGGCAAGAGTAAAACTAGAGTGTCTTCTGAAGAAGTTATTGGCGTTTTGAAGTCAATTTTGGATCCCAATTCTGCTCTTTTGTATTTTAAGATGGTTTCCCAGTTGCCTAATCTTGTGCATACACCCGAAACATGTAATTACATGCTGGAGCTCCTGAGGGTTCACGGGAGAGTTGAGGATATGGTTTTTGTGTTTGATTTTATGCAAGAGCAAGTGATTAACAGGAATCCGAATACATATCTGACTATCTTTAAGGCTCTTTCGATTAAAGGTGGGATTCGGCAAGCACCATTTGCACTTGGAAAGATGAGGCAAGCTGGGTTTGTCTTGAATGCTTATTCATATAATGGACTGATTCATTTCCTTCTCCAACCTGGCTTTTGTAAAGAGGCTTTGAAGGTTTACAAAAGAATGATCTCGGAAGGGATGAAGCCTAGTATGAAGACTTACTCAGCGTTAATGGTAGCATTGGGGAAGAGGAGGGAGACTGGAACCATTATGGATTTACTGGAAGAGATGAAAACTTTAGGTTTGAGGCCAAATATCTACACATATACCATATGTATTAGAGTGCTTGGAAGGGCAGGGAGAATCGACGATGCGTGTGGGATTTTAAAGACAATGGACAATGAAGGATGCGGGCCTGATGTTGTCACTTATACGGTTCTAATTGATGCACTTTGTGTTGCAGGGAAACTTGATAAGGCCATGGAATTATACACAAAGATGAGGGCTAGCGGTCACAAACCAGATCAGGTGACTTACATTACTTTAATGGGCAATTTCGGTAATTATGGCAACTTGGAAATGGTGAAAAGATTCTGGAGTGAGATGGAGGCTGATGGTTATGCTCCTGATGTGGTTTCCTACACTATAATTGTTGAGGCTTTATGTAAGTCTGGAAAAGTTGATCAGGCATTTGATATATTAGATGTGATGAAAGTGAAAGGGATTTTTCCAAATCTTCATACTTACAACACGTTGATCTCTGGACTTTTGAACCTGAGAAAATTAGATGAGGCATTAGAGCTTTTCAACAGTCTGGAATCTTTGGGTGTTGAACCAACTGCTTATTCATACGTTCTTTTTATTGACTACTATGGAAAGTTGGGTGATCCTGAAAAAGCTCTTGACACCTTTCAAAAAATGAAGAAGAGAGGTATTTTGCCTAGTATAGCCGCATGTAATGCATCTTTATATAGTCTTGCTGAAACAGGTAAGATCAGAGAAGCAAGATATATATTCAATGATCTTCACAACTGTGGGCTTTTACCTGATTCAGTAACATATAACATGATGATGAAGTGCTACAGCAAAGCAGGGCAAATAGACAAATCTACAAAACTTTTGACTGAGATGTTAAGTGAAGGGTGTGAACCAGATATAATTGTAGTTAATTCTTTAATTGACACACTTTACAAGGCTGACCGAGTTGATGAGGCATGGAAAATGTTTGGGAGATTGAAGGATTTGAAGCTAGCTCCTACAGTTGTGACATACAACATTTTACTTACTGGTTTAGGGAAAGAGGGAAAACTCCGGAGGGCCCTTGATTTGTTTGGGAGTATGAATGAGTCTGGATGTCCTCCAAACACGGTGACTTTTAATGCACTCCTTGATTGTCTTTGCAAGAATAATTCAGTTGATTTGGCTTTGAAAATGTTCTGTAGAATGACAATCATGAACTGTAGTCCTGATGTTCTAACTTATAACACTATTATCTATGGCTTGCTCAAGGAAGGCAGGGCTGATTATGCATTCTGGTTTTACCATCAAATGAAGAAATTTCTCTCCCCTGATCGTGTAACTTTGTACACCCTCCTTCCTGGTGTTGTAAAGCTTGGAAGTATTGAGGATGCTATCAAGATTGTCATGGAATTTGTACATCAACCAGGTTTACAGACAAGTAGTCAATTCTGGAGAGAATTAATGGAATGTATTTTAATTGAAGCAGAAATAGAAGAGGCCATTTCATTTGCTGAAGGATTGGTGTGCAATTCTATTTGCCTAGATGATAATTTGATAATACCTTTTATTAGAATCCTGTGCAAGCGGAACAAGGCTCTTGATGCTCAAAATTTGTTTGACAAATTCACCAAAACTTTGGGAATTCACCCTTCCTCGGAATCGTATAACTGCTTGATAGATGGGCTTCTTGGAAGTAATTTCACTGAACCAGCTTTCAAACTTTTTATTGAGATGAAGAATGCAGGTTGTTGCCCAAATATTTTCACCTACAACTTGTTGCTTGATGCTCATGGTAAATCAAAGAGGATTGATGAACTTTTTGAACTGTACAATAATATGATCTGTAGGGGATGCAAGCCGAATACTATAACCCATAATATCGTCATCTCTGCCCTTGTGAAATCTAAAAACATAAATAAGGCATTAGATTTATACTATGATCTCGTAAGTGGTGATTTCTTTCCCACTCCTTGTACATATGGCCCTCTTATAGACGGCCTTTTAAAGGCTGGAAGATTAGAGGAAGCAATGAATATTTTTGAGGAGATGCCAGACTATCATTGCAAGCCCAACTGTGCTGTTTATAATATTCTCATCAACGGATTTGGGAAAGCAGGTAACGTTGACATTGCTTGTGATTTGTTCAAAAGGATGGTTAAGGAAGGGATAAGACCAGACTTGAAGTCTTATACCATTCTTGTAGAATGCCTGTGTATGAGTGGCAGAGTTGATGATGCCGTGCACTACTTTGAGGAACTAAAGTTGACTGGCCTTGATCCTGATACTGTTTCTTATAATCTTATGATCAATGGCCTTGGAAAATCTCACAGGTTTGAGGAAGCTCTTTCTCTTTTCAGTGAAATGAAGAATAGGGGAATCACTCCTGATCTTTATACTTACAATTCATTGATTCTCCATTTTGGAAATGCTGGAATGGTAGACCGAGCCGGAAAGATGTTCGAGGAACTGCAGCTTATGGGTCTTGAACCTAATGTCTTCACTTACAATGCTCTCATTCGTGGGCATACTATGTCAGGGAACAAAGATCGAGCCTTTTCTGTCCTCAAGAAGATGATGGTTGTGGGGTGTAGCCCCAATGCAGGAACATTTGCACAATTGCCTGATAAATGTTGA 3321 0.3924 MAVVVPLSSTSCCAFGDTNVYAMSNNGFFGGTPFVKMKSLPNGSLVNWKKHGKRQLGIGVLVTRCAPEVVAVNGKSKTRVSSEEVIGVLKSILDPNSALLYFKMVSQLPNLVHTPETCNYMLELLRVHGRVEDMVFVFDFMQEQVINRNPNTYLTIFKALSIKGGIRQAPFALGKMRQAGFVLNAYSYNGLIHFLLQPGFCKEALKVYKRMISEGMKPSMKTYSALMVALGKRRETGTIMDLLEEMKTLGLRPNIYTYTICIRVLGRAGRIDDACGILKTMDNEGCGPDVVTYTVLIDALCVAGKLDKAMELYTKMRASGHKPDQVTYITLMGNFGNYGNLEMVKRFWSEMEADGYAPDVVSYTIIVEALCKSGKVDQAFDILDVMKVKGIFPNLHTYNTLISGLLNLRKLDEALELFNSLESLGVEPTAYSYVLFIDYYGKLGDPEKALDTFQKMKKRGILPSIAACNASLYSLAETGKIREARYIFNDLHNCGLLPDSVTYNMMMKCYSKAGQIDKSTKLLTEMLSEGCEPDIIVVNSLIDTLYKADRVDEAWKMFGRLKDLKLAPTVVTYNILLTGLGKEGKLRRALDLFGSMNESGCPPNTVTFNALLDCLCKNNSVDLALKMFCRMTIMNCSPDVLTYNTIIYGLLKEGRADYAFWFYHQMKKFLSPDRVTLYTLLPGVVKLGSIEDAIKIVMEFVHQPGLQTSSQFWRELMECILIEAEIEEAISFAEGLVCNSICLDDNLIIPFIRILCKRNKALDAQNLFDKFTKTLGIHPSSESYNCLIDGLLGSNFTEPAFKLFIEMKNAGCCPNIFTYNLLLDAHGKSKRIDELFELYNNMICRGCKPNTITHNIVISALVKSKNINKALDLYYDLVSGDFFPTPCTYGPLIDGLLKAGRLEEAMNIFEEMPDYHCKPNCAVYNILINGFGKAGNVDIACDLFKRMVKEGIRPDLKSYTILVECLCMSGRVDDAVHYFEELKLTGLDPDTVSYNLMINGLGKSHRFEEALSLFSEMKNRGITPDLYTYNSLILHFGNAGMVDRAGKMFEELQLMGLEPNVFTYNALIRGHTMSGNKDRAFSVLKKMMVVGCSPNAGTFAQLPDKC 1106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00678 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 324 358 IPR002885 -
Phco7g00678 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 429 463 IPR002885 -
Phco7g00678 1106 Gene3D Tetratricopeptide repeat domain 436 585 IPR011990 GO:0005515
Phco7g00678 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 184 218 IPR002885 -
Phco7g00678 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 359 393 IPR002885 -
Phco7g00678 1106 Gene3D Tetratricopeptide repeat domain 350 424 IPR011990 GO:0005515
Phco7g00678 1106 Gene3D Tetratricopeptide repeat domain 1054 1105 IPR011990 GO:0005515
Phco7g00678 1106 Gene3D Tetratricopeptide repeat domain 985 1053 IPR011990 GO:0005515
Phco7g00678 1106 Pfam PPR repeat 783 812 IPR002885 -
Phco7g00678 1106 Pfam PPR repeat 432 461 IPR002885 -
Phco7g00678 1106 Pfam PPR repeat 538 564 IPR002885 -
Phco7g00678 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 920 954 IPR002885 -
Phco7g00678 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 885 919 IPR002885 -
Phco7g00678 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 289 323 IPR002885 -
Phco7g00678 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 955 989 IPR002885 -
Phco7g00678 1106 PANTHER ATPASE EXPRESSION PROTEIN 3 245 560 - -
Phco7g00678 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 534 568 IPR002885 -
Phco7g00678 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1025 1059 IPR002885 -
Phco7g00678 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 815 849 IPR002885 -
Phco7g00678 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 990 1024 IPR002885 -
Phco7g00678 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 780 814 IPR002885 -
Phco7g00678 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 254 288 IPR002885 -
Phco7g00678 1106 Pfam PPR repeat family 814 863 IPR002885 -
Phco7g00678 1106 Pfam PPR repeat family 989 1033 IPR002885 -
Phco7g00678 1106 Pfam PPR repeat family 568 617 IPR002885 -
Phco7g00678 1106 Pfam PPR repeat family 919 967 IPR002885 -
Phco7g00678 1106 Pfam PPR repeat family 638 684 IPR002885 -
Phco7g00678 1106 Pfam PPR repeat family 358 406 IPR002885 -
Phco7g00678 1106 Pfam PPR repeat family 498 535 IPR002885 -
Phco7g00678 1106 Pfam PPR repeat family 288 333 IPR002885 -
Phco7g00678 1106 SUPERFAMILY HCP-like 865 1088 - -
Phco7g00678 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 639 669 IPR002885 -
Phco7g00678 1106 NCBIfam pentatricopeptide repeat 1027 1061 IPR002885 -
Phco7g00678 1106 NCBIfam pentatricopeptide repeat 783 816 IPR002885 -
Phco7g00678 1106 NCBIfam pentatricopeptide repeat 431 464 IPR002885 -
Phco7g00678 1106 NCBIfam pentatricopeptide repeat 571 605 IPR002885 -
Phco7g00678 1106 NCBIfam pentatricopeptide repeat 291 324 IPR002885 -
Phco7g00678 1106 NCBIfam pentatricopeptide repeat 992 1025 IPR002885 -
Phco7g00678 1106 NCBIfam pentatricopeptide repeat 606 640 IPR002885 -
Phco7g00678 1106 NCBIfam pentatricopeptide repeat 222 255 IPR002885 -
Phco7g00678 1106 NCBIfam pentatricopeptide repeat 958 991 IPR002885 -
Phco7g00678 1106 NCBIfam pentatricopeptide repeat 501 535 IPR002885 -
Phco7g00678 1106 NCBIfam pentatricopeptide repeat 887 921 IPR002885 -
Phco7g00678 1106 NCBIfam pentatricopeptide repeat 817 851 IPR002885 -
Phco7g00678 1106 NCBIfam pentatricopeptide repeat 186 219 IPR002885 -
Phco7g00678 1106 NCBIfam pentatricopeptide repeat 852 885 IPR002885 -
Phco7g00678 1106 NCBIfam pentatricopeptide repeat 1062 1096 IPR002885 -
Phco7g00678 1106 NCBIfam pentatricopeptide repeat 361 394 IPR002885 -
Phco7g00678 1106 NCBIfam pentatricopeptide repeat 537 569 IPR002885 -
Phco7g00678 1106 NCBIfam pentatricopeptide repeat 326 360 IPR002885 -
Phco7g00678 1106 NCBIfam pentatricopeptide repeat 396 429 IPR002885 -
Phco7g00678 1106 NCBIfam pentatricopeptide repeat 923 955 IPR002885 -
Phco7g00678 1106 NCBIfam pentatricopeptide repeat 256 290 IPR002885 -
Phco7g00678 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 219 253 IPR002885 -
Phco7g00678 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 499 533 IPR002885 -
Phco7g00678 1106 Pfam PPR repeat 882 912 IPR002885 -
Phco7g00678 1106 Pfam PPR repeat 250 281 IPR002885 -
Phco7g00678 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 569 603 IPR002885 -
Phco7g00678 1106 Gene3D Tetratricopeptide repeat domain 235 349 IPR011990 GO:0005515
Phco7g00678 1106 Gene3D Tetratricopeptide repeat domain 869 984 IPR011990 GO:0005515
Phco7g00678 1106 Gene3D Tetratricopeptide repeat domain 586 743 IPR011990 GO:0005515
Phco7g00678 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1060 1094 IPR002885 -
Phco7g00678 1106 Gene3D Tetratricopeptide repeat domain 744 868 IPR011990 GO:0005515
Phco7g00678 1106 Gene3D Tetratricopeptide repeat domain 66 234 IPR011990 GO:0005515
Phco7g00678 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 850 884 IPR002885 -
Phco7g00678 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 394 428 IPR002885 -
Phco7g00678 1106 Pfam Pentatricopeptide repeat domain 175 233 IPR002885 -
Phco7g00678 1106 Pfam Pentatricopeptide repeat domain 1048 1100 IPR002885 -
Phco7g00678 1106 SUPERFAMILY HCP-like 406 634 - -
Phco7g00678 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 604 638 IPR002885 -
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00678 7 5168554 5171874 Phco7g00678 7 5168554 5171874 ECH