Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00653 ATGATTTCCACAATGAATTGGGACGAGAACGATGAATTTGAGATCCCTCTTACTCAAACGGCAACGAGTTTTCACGCGCTCGCTTCCGTCGATAACAATCAACGGCCACTGAAGAAACCTAAAAGCAAAAGGACGTCGCATCGTGGCAGTGGCAAGGAGAACGTCCGACCCAGCGAGTTTTGCGAAATTGAGAACTGCAGCTTGGATTTCATTCCTTCCACCATAGATTGGGTTTCGGTTTGCAGCGATCAAGGCTCGGAACAAGAAGACAGTGATTCTTCTTCTTCCGCATCTTTGTCGGAGCTGAAGCAGAAGGGGGATTATCTTCGCAACTCGATAGAGTCGAAGCTGGTGGTTTCGACAACCGGCGTGCTTAACGCTGCAGATGCAGACTCTGATTCGGAGCTTGGTCTGTTGATGAATCTGTGCGACGAGTTGGAGGAAGTAGATAGTTCCGTTCGGTGTCCCCTGTGTGACGTTGATATTTCGAATTTGACCGAGGAACAGCGACATCTTCATACCAATAATTGTCTTGACGAAGGAGATAACGTTGCAGTTCCTGAAGACGAGAAGGGTGCTCAACATGTGCCAAAAGTCGCTTCTGTTGTTGATTGGCTTCACGGGCTCGGTTTGGGAAAGTATGAAGTGGTTTTCATCAGGGAAGAAGTTGATTGGAACACCTTGCAATGCCTCACAGAAGAGGATCTCTTAAGCATGGGTATCACTGCACTTGGGCCCAGAAAGAAGATAGTTCATGCCCTGCGTGAACTAAGAAACGGAGATGCCGCTATAAATGAGAAACAAGAGGATGCGTTGGAGGAGCCTAGAAGGATTAGAAACCAGAAAGTCAAATTAAAGCATGACAAATCTGAAAGAAAAGCTGATGGCTCTATTAAACCAGTGGCAAACAAATTAATTACTGAATATTTTCCGGGGTTTGCTTCCAAAGAAAAGAAACTTTTTGCCTCTCCTGGAGAGCAGAAGGAAATGAAAAACAGTGGCTTGGATTCTGGCCATAAGCGCAAATCAAAAAATGTGACAGCAAATAGAAAGCTCCGTGATGTTCCCAAATGGTGTTCTGTACAAGGAACGCCTTTTCGAGTGGATGCTTTCAAATATCTCAGAGGAGATTGTTCCCACTGGTTTCTAACACACTTCCACTTGGACCATTATCAAGGTCTTACCAAGTCATTCAATCATGGAAAGATTTATTGCTCCTCCATTACTGCTAGACTAGTAAATACGAACATTGGAATTCCATATGATAAATTACATGTTTTGCCTCTGAACCAAAAGATTGAAATAGCTGGTGTTGATGTGACTTGCTTTGATGCCAACCATTGTCCAGGTTCCATACTCATACTCTTTCAACCTCCAAATGGTAAGGCTGTGCTGCACACGGGTGATTTCCGGTTTAGTGAGGAAATGACAATCAATCCTTTACTCAAGACGTGTCCTATCAATACTCTAATTCTTGATACGACATACTGCAATCCACAGTATGACTTTCCAAAACAAGAGGCTGTAATACAATTCGTTATTGATGCCATTCAAGCAGAAACTTTTAATCCCAAGACTCTTTTTCTGATCGGCAGTTATACCATTGGAAAAGAAAGGATATTCTTGGAGGTTGCTCGTGCGCTTAGTAAAAAGGTTCACGTGACTGCGGCAAAGTTGCGTCTTTTAAAATGTTTGGAATTTAAGGATGAGGATATGCAGTGGTTCACTTCAAATGAACATGAAAGCAACATTCATGTTGCCCCTATGTGGACTCTCGCAAGCTTCAAAAGATTAAAGCAAGTATCAAGTCAATATAAGGGTCGGTACAATCTTATAGTTGCTTTCTCGCCCAGTGGTTGGACGTTTGGCAAAGGTAAAAAGAAGTCTCCCGGAAGAAGATGTCAGCAGGGTACTATTATAAGGTATGAAGTACCTTACAGTGAGCATAGCAGCTTTACAGAACTCAAAGAGTTTGTAAAACTTGTATCTCCTGGTAACATTATACCAAGTGTGAATAACGATGGACCAGAATCTTCTGATGCAATGATTTCTCTATTGTTATCTTGA 2067 0.4267 MISTMNWDENDEFEIPLTQTATSFHALASVDNNQRPLKKPKSKRTSHRGSGKENVRPSEFCEIENCSLDFIPSTIDWVSVCSDQGSEQEDSDSSSSASLSELKQKGDYLRNSIESKLVVSTTGVLNAADADSDSELGLLMNLCDELEEVDSSVRCPLCDVDISNLTEEQRHLHTNNCLDEGDNVAVPEDEKGAQHVPKVASVVDWLHGLGLGKYEVVFIREEVDWNTLQCLTEEDLLSMGITALGPRKKIVHALRELRNGDAAINEKQEDALEEPRRIRNQKVKLKHDKSERKADGSIKPVANKLITEYFPGFASKEKKLFASPGEQKEMKNSGLDSGHKRKSKNVTANRKLRDVPKWCSVQGTPFRVDAFKYLRGDCSHWFLTHFHLDHYQGLTKSFNHGKIYCSSITARLVNTNIGIPYDKLHVLPLNQKIEIAGVDVTCFDANHCPGSILILFQPPNGKAVLHTGDFRFSEEMTINPLLKTCPINTLILDTTYCNPQYDFPKQEAVIQFVIDAIQAETFNPKTLFLIGSYTIGKERIFLEVARALSKKVHVTAAKLRLLKCLEFKDEDMQWFTSNEHESNIHVAPMWTLASFKRLKQVSSQYKGRYNLIVAFSPSGWTFGKGKKKSPGRRCQQGTIIRYEVPYSEHSSFTELKEFVKLVSPGNIIPSVNNDGPESSDAMISLLLS 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00653 688 Gene3D - 362 671 IPR036866 -
Phco7g00653 688 Gene3D - 502 649 - -
Phco7g00653 688 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 350 682 - -
Phco7g00653 688 CDD SNM1A-1C-like_MBL-fold 342 499 - -
Phco7g00653 688 SMART SAM_4 194 260 IPR001660 GO:0005515
Phco7g00653 688 MobiDBLite consensus disorder prediction 322 347 - -
Phco7g00653 688 SUPERFAMILY SAM/Pointed domain 198 259 IPR013761 -
Phco7g00653 688 SUPERFAMILY Metallo-hydrolase/oxidoreductase 366 670 IPR036866 -
Phco7g00653 688 Gene3D - 194 269 IPR013761 -
Phco7g00653 688 Pfam Beta-lactamase superfamily domain 382 501 IPR001279 -
Phco7g00653 688 Pfam DNA repair metallo-beta-lactamase 571 674 IPR011084 -
Phco7g00653 688 Pfam SAM domain (Sterile alpha motif) 198 258 IPR001660 GO:0005515
Phco7g00653 688 CDD SAM_superfamily 201 256 - -
Phco7g00653 688 FunFam DNA ligase 6 361 521 - -
Phco7g00653 688 ProSiteProfiles SAM domain profile. 197 260 IPR001660 GO:0005515
Phco7g00653 688 MobiDBLite consensus disorder prediction 28 54 - -
Phco7g00653 688 FunFam DNA cross-link repair 1A protein 502 649 - -
Phco7g00653 688 MobiDBLite consensus disorder prediction 332 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00653 Phco-Chr7 4962162 4968114 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00653 7 4962162 4968114 Phco7g00653 7 4962162 4968114 ECH