Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00646 ATGAATTTGAGCAATAATTCACCAGGCCATAACCAGAAACATAGTAAAATACGAAAGCAACCCGATGCTGATAATTCTTCATACCTAGAATTGTCTAATTCCAACATGAACCCCAGAAGGTATCAGGTAGAGGTGTTTCAAGTTGCATGGAGAAGGAACACAATAGCTGTGTTGGATACAGGTTCGGGTAAGACCTTGATTGCTGTGATGCTTATGAAAGAGGTTGGTCAAACCATCAAGACTTTGGGAGTGAAGAAGCTGATTGTTTTTTTGGCTCCCACAGTTCATCTTGTCAATCAGCAATTCAATAATATAAAATATCTGACAGATTTTCAAGTTGAGGAATACTATGGGGCTAAAGGAGTTGATACATGGACTTTGAAGACATGGGAGAAGGAGATTAGTACCAATGATGTATTGGTTATGACACCCCAAATTCTTTTGGATGCCTTAAGAAAAGCATTCCTGCGTATGGAAATGATATGCTTGATTGTTATTGATGAATGTCATAGAGCAACCGGCAACCATCCCTATGCAAAAATAATGAAGGAATTTTATCACCAAGCAAATGAAAAGCCAAAGATTTTTGGGATGACAGCATCACCAGTTGGTAAAAAAGGTGTTTCCTCTTCTACGGATTGTGAGGATCAAATATCAGAACTTGAAAGCATCTTGGATGCTAAGAGATATACCATTGAAGATCGGACACAGATGGATGGATATATATTGTCTGCTCAAGAGAGTTGTAGATATTATGACCAAGCACGATTTTGTGCGTTGAGTTTGAAACCAAAGATTGAAGCCTTGTGGTTCAAGTTTGATGCATTGTTATCAGAAAATAAAAGTAACTATATGGATGTGGAAAATAAATTTAGGACACTGTCCCAACGGATGTCCAATGAACTTGGAAAAATTTTACATTGCCTTGAAGATCTTGGAATCCTATGTGCCTATGAGGCAGTTAAAATCTGTCATGAGAATTTCTCCAGAACTGAAGGAATGTGTGAAATTTACAAAACAGGTTATCTTCAGTGTATAACTTTTGTTGAAGAAGTAATAAAATTAATTGAAGAATCCCTCCATCTAGCTGATAAAAATATTTTGGGGGTTGATTTTGATTATTCGAAGGCAGAAGATATGGGATACATATCTCCAAAATTACTTGAACTTATTAAAATCTTCCAATCACTTGGAGAATCTAGTCAGGTGGTGTGCCTTATTTTTGTTGATAGAATCATTACAGCTAAGGTGATTGAAAGATTTGCAAAGAAAGTTTCCCAGATTTCTCATTTCTCAGTTTCTTATTTAACTGGAAACAATACATCGGTTGATGCTGTGACTCCTAAAAGGCAGAAGGAGATATTGGATTCTTTTCGCACTGGAAAGGTCAATCTATTATTTACTACTGATGTACTTGAGGAAGGAATCCATGTGCCAAATTGCTCATGTGTGATACGATTTGACCTCCCAAAGACTGTTCGTAGTTATGTCCAATCTCGTGGAAGATCTAGGCAGGCTAACTCCCAATTTGTTGTGATGTTGGAGAGGGGAAATCTGAAGCAAAGAAATCAACTCTTTGACATAATTAGGAGTGAGCGCTCCATGACTGATGCATCTATGAATAAGGACCATGAATCTAGTTTAAGGGTATGTACGATGGGGAAAACAGATGCATACTATGTGGAATCTACCGGAGCTTCTCTGACTTTAGATTCTAGTGTTAATCTTATCCACCGATACTGTGGAACACTTCCACGAGATCAGTACTCCTCTGCAAAGCCCCGTTATGTGTTTCTGCCAGTGGAAGGGGGTTATCAATGTAAATTAACATTACCATCTAATTCAGCCCTCCAGGCAATAATTGGTCCTTCAGGAAAAGATATTCGTTTGGCAAGACATCTTGCTTGTTTTGAAGCTTGTAAGAAGTTGCATCTAATGGGTGCCTTAAATGAACATTTGGTTCCATTCATTGAAAATCATTCAGAAGATGACCATATTGTGAAAAATAAAGAATCTAGTTCGGGGGCAGGAACCACGAAAAGAAAGGAGTTACATGGAACAGCCAACATTCGTGCACTAAATGGTGCATGGGGAGACAAACTTGATGATGCAGCCAGATTTTTTGCCTATAGACTAGAATTTGCATGTAGTATTCTTAGTGAAATATACTCTGGGTTTGTTCTTTTGATTGAGTCAAAGCTTGATGATGATGTGGGAAATATAGATTCAGATCTTTATTTAGTCTCAAAGACCGTGAAAGCTTCTGTCTCTTCGTGTGGGCAAGTTGATTTGGATGCTAAACAGATGATGAAAGCAAAATGCTTCCATGAGCTTTTTTTCAATGGTTTATTTGGTAGATTGGTGTTTAGGTCAAAATCAGCAGGAGGAGAAACAGAATTTTTACTTCAAAAAGACACAAAATCATTGTGGAGAGAAAAACACTTATATTTGCTTCTACCACTTGAGAAATTGAATGGCATTTGTGGGGGAGCCTTCCAAATTAATTGGCATGGAATCAGTTCTTGTGCATCTGCTATTGAATTCTTAAGGAGGAAATTTTCTCTGGGCATGGGAGATTGTGATGATAACGGAATAATCACATCACCTCAGGATACCAGTTCAATGGAGATTGAATATTTTGGAACAGACAAGATTCACTTTGCTAATTGTGTGGTTGATGCTGACAATATAAAAGGCACGTTAGTTTTGGCCATTCACACTGGAAAAATATATTGTATTATTGACATCGACAGTAACTTGTCTGCTGAAAGTCCTTTCTGTGAAAAGTCCAAGGAACACGTTACCTTCTCAGATTATTTCAGCAAAAGGTATGGGATTACACTGAGACATCCAAGACAGTCTCTTTTACTATTAAAGCAAAGTCATAATCCACACAATCTTCTTTTTAACTTTCACGAGGAAGATGGACGAGACAAGTCATCACAAATGGGCTCTACAACCTCCAAAGTGCCTGCGCATGTTCACGTCCCACCTGAGCTTCTATTTGTTCTTGATTTTAAAAGAAACGTGTTGAGGTCATTGTACTTGTTACCATCTCTAATGTACCGCATTGAATCGTTAATGTTATCTAGTCAGCTTAGAGAAGAGATAGATGGTCAAACTAGCAAGTCCAACATAAATAGCTCACTGATTCTAGAAGCACTTACAACTTTGAGATGCAATGAAAGCTTTTCAATGGAACGTCTTGAGTTGCTAGGAGATTCTGTTTTGAAATATGTGGTGAGCTGTCACCTCTTTCTTAAATATCCCAAGAAACATGAAGGACAATTATCTACCAGACGATCACTAGCAGTTCGTAATTCAACGCTTCATAAACTGGCGATAGATCGCAAATTACAGGGATATATTCGAGACTCTGCATTTGAACCACGTCGTTGGGTTGCTCCAGGACAGCATTCTATACACCCTGTTTGTTGTGATTGTGGATTGGATACCCTTGAAGTGCCTTTAGATGTTAAATTCCACACTGAGGATCCAAAAGTTGTGGTTGGGAAGTTTTGTGACAGGGGTCACCGCTGGATGTGTTCTAAGACTATTGCTGACTGTGTTGAAGCTCTGATAGGAGCATACTATGTGGGTGGTGGACTCTTTGCATCACTCAATCTGATGAAATGGCTTGGATTTGGCACTGAACTTGAACTATCCTTGGTTGACGAAGCAAGTACTGCTGCCTCTCTGCATAGTTGCGTCCTAAAAGAAAGTGAGATTGAATGCCTTGAAAAGAAAATTGGGTATGAATTTTCTGTCAAGGGACTCTTACTGGAGGCTATCACACATTTGTCTGAGAAAGAACTTGGTATTGGCTGCTGTTATGAGAGACTCGAATTTCTTGGTGATTCGGTGTTGGACCTGCTTATCACATGGCATCTATATCAGAGTCACACAGATATTGATCCAGGGGTGTTGACTGACTTACGATCTGCTTCTGTCAATAATGACAATTTTGCTCAAGTTGCTGTTAGACATAACCTTCACCAGCATCTCCTACATGGCTCGGGATTATTACTGAGCCAGATATCAGAATATGCAAAGGCCATTTCTGAACCAGATCCTAGATCACTTCCAAGCATTAGAGCTCCGAAGGCACTTGGAGATCTATTGGAAAGTATTGTTGGGGCTATGCTAATTGATACCAAGCTCAATCTTGACCAAGTGTGGGAGGTTTTCTGTCCTCTATTATCCCCCATAGTTACACCTGAAAAACTTGAGTTGCCTCCATTTCGTGAATTAAATGAATTGTGTGATTCTCTTGGGTATTTTGTAAAAGTAAATGAAAATTGTGAAAAAAAGGGATCCATGGTGCATGTTGAGGTTAGTGTACAGTTGCTAAATGATCTGTTGGTTCGTGAAGGAAAGGGGGTCAATAAAAAAACTGCAAAAGGAGAAGCTTCATTTCATTTGTTGAAGGATCTTGAGAAGCGGGGAATTTCATATTGCAATTTCATGTCCAAGGGAAAAAGAGATAATTCTGTCCTTATCAATGATTCACCTCATCTGAAAATGGATTCTAGTACTTGTTTTACTCTAATTGAAGAACATTCCTCAGAGCCGGTACTTAAAAGGAACAGATTGGATGGAACTAACCCAACTGAAAGTATTTTGCCTCTCAAAGACTCTTCCTATGACGACCCTGGTTTTAGTGCTTCCATTCCAGTTAATTTATCAATTAATATGAAAAAGGGAGGACCACGGACCACACTATTTGAGGTGTGTAAGAAACTACAGTGGCCAGTGCCTACATTTGATCCAACTGAATATAAAGATAGATCTCTATTTGAATCCTGTGAAGGCCTGCAAGGAAGCAAGGGACTTAACTGTTTTGTTTCAAAAATTACCTTGTGCATACCCAAGTATGGAAATATAGAGTGCCAAGGAGAAGCTAGAAGTGATAAGAAGAGCTCCTTTGACTCTGCTGCAGTTAAAATGCTTCTTGAGCTGCAAAAACTGGGAAAAGTTGAAATTGATCCCCCCCTTTCTAGTTAG 5004 0.3883 MNLSNNSPGHNQKHSKIRKQPDADNSSYLELSNSNMNPRRYQVEVFQVAWRRNTIAVLDTGSGKTLIAVMLMKEVGQTIKTLGVKKLIVFLAPTVHLVNQQFNNIKYLTDFQVEEYYGAKGVDTWTLKTWEKEISTNDVLVMTPQILLDALRKAFLRMEMICLIVIDECHRATGNHPYAKIMKEFYHQANEKPKIFGMTASPVGKKGVSSSTDCEDQISELESILDAKRYTIEDRTQMDGYILSAQESCRYYDQARFCALSLKPKIEALWFKFDALLSENKSNYMDVENKFRTLSQRMSNELGKILHCLEDLGILCAYEAVKICHENFSRTEGMCEIYKTGYLQCITFVEEVIKLIEESLHLADKNILGVDFDYSKAEDMGYISPKLLELIKIFQSLGESSQVVCLIFVDRIITAKVIERFAKKVSQISHFSVSYLTGNNTSVDAVTPKRQKEILDSFRTGKVNLLFTTDVLEEGIHVPNCSCVIRFDLPKTVRSYVQSRGRSRQANSQFVVMLERGNLKQRNQLFDIIRSERSMTDASMNKDHESSLRVCTMGKTDAYYVESTGASLTLDSSVNLIHRYCGTLPRDQYSSAKPRYVFLPVEGGYQCKLTLPSNSALQAIIGPSGKDIRLARHLACFEACKKLHLMGALNEHLVPFIENHSEDDHIVKNKESSSGAGTTKRKELHGTANIRALNGAWGDKLDDAARFFAYRLEFACSILSEIYSGFVLLIESKLDDDVGNIDSDLYLVSKTVKASVSSCGQVDLDAKQMMKAKCFHELFFNGLFGRLVFRSKSAGGETEFLLQKDTKSLWREKHLYLLLPLEKLNGICGGAFQINWHGISSCASAIEFLRRKFSLGMGDCDDNGIITSPQDTSSMEIEYFGTDKIHFANCVVDADNIKGTLVLAIHTGKIYCIIDIDSNLSAESPFCEKSKEHVTFSDYFSKRYGITLRHPRQSLLLLKQSHNPHNLLFNFHEEDGRDKSSQMGSTTSKVPAHVHVPPELLFVLDFKRNVLRSLYLLPSLMYRIESLMLSSQLREEIDGQTSKSNINSSLILEALTTLRCNESFSMERLELLGDSVLKYVVSCHLFLKYPKKHEGQLSTRRSLAVRNSTLHKLAIDRKLQGYIRDSAFEPRRWVAPGQHSIHPVCCDCGLDTLEVPLDVKFHTEDPKVVVGKFCDRGHRWMCSKTIADCVEALIGAYYVGGGLFASLNLMKWLGFGTELELSLVDEASTAASLHSCVLKESEIECLEKKIGYEFSVKGLLLEAITHLSEKELGIGCCYERLEFLGDSVLDLLITWHLYQSHTDIDPGVLTDLRSASVNNDNFAQVAVRHNLHQHLLHGSGLLLSQISEYAKAISEPDPRSLPSIRAPKALGDLLESIVGAMLIDTKLNLDQVWEVFCPLLSPIVTPEKLELPPFRELNELCDSLGYFVKVNENCEKKGSMVHVEVSVQLLNDLLVREGKGVNKKTAKGEASFHLLKDLEKRGISYCNFMSKGKRDNSVLINDSPHLKMDSSTCFTLIEEHSSEPVLKRNRLDGTNPTESILPLKDSSYDDPGFSASIPVNLSINMKKGGPRTTLFEVCKKLQWPVPTFDPTEYKDRSLFESCEGLQGSKGLNCFVSKITLCIPKYGNIECQGEARSDKKSSFDSAAVKMLLELQKLGKVEIDPPLSS 1667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00646 1667 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 45 220 IPR014001 -
Phco7g00646 1667 SMART riboneu5 1049 1222 IPR000999 GO:0004525|GO:0006396
Phco7g00646 1667 SMART riboneu5 1258 1409 IPR000999 GO:0004525|GO:0006396
Phco7g00646 1667 SMART PAZ_2_a_3 872 1029 IPR003100 GO:0005515
Phco7g00646 1667 Gene3D - 376 541 IPR027417 -
Phco7g00646 1667 Pfam Ribonuclease III domain 1067 1201 IPR000999 GO:0004525|GO:0006396
Phco7g00646 1667 Pfam Ribonuclease III domain 1279 1385 IPR000999 GO:0004525|GO:0006396
Phco7g00646 1667 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 573 663 IPR005034 GO:0016891
Phco7g00646 1667 FunFam Dicer-like 104 1025 1214 - -
Phco7g00646 1667 Gene3D Dicer dimerisation domain 568 666 IPR038248 -
Phco7g00646 1667 Pfam Dicer dimerisation domain 573 658 - -
Phco7g00646 1667 ProSitePatterns Ribonuclease III family signature. 1279 1287 IPR000999 GO:0004525|GO:0006396
Phco7g00646 1667 MobiDBLite consensus disorder prediction 1 33 - -
Phco7g00646 1667 SUPERFAMILY PAZ domain 894 1005 IPR036085 GO:0005515
Phco7g00646 1667 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 386 544 IPR001650 -
Phco7g00646 1667 Gene3D paz domain 886 1012 - -
Phco7g00646 1667 ProSiteProfiles PAZ domain profile. 894 1005 IPR003100 GO:0005515
Phco7g00646 1667 SMART helicmild6 419 506 IPR001650 -
Phco7g00646 1667 CDD RIBOc 1259 1407 IPR000999 GO:0004525|GO:0006396
Phco7g00646 1667 FunFam Endoribonuclease dicer-like 1 568 664 - -
Phco7g00646 1667 CDD DEXHc_dicer 36 234 - -
Phco7g00646 1667 Pfam PAZ domain 894 1026 IPR003100 GO:0005515
Phco7g00646 1667 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 86 514 IPR027417 -
Phco7g00646 1667 CDD SF2_C_dicer 382 514 - -
Phco7g00646 1667 Gene3D - 32 268 IPR027417 -
Phco7g00646 1667 ProSiteProfiles Ribonuclease III family domain profile. 1243 1386 IPR000999 GO:0004525|GO:0006396
Phco7g00646 1667 FunFam Endoribonuclease dicer-like 1 377 540 - -
Phco7g00646 1667 ProSiteProfiles Ribonuclease III family domain profile. 1030 1202 IPR000999 GO:0004525|GO:0006396
Phco7g00646 1667 PANTHER DICER-RELATED 52 1489 - -
Phco7g00646 1667 SUPERFAMILY RNase III domain-like 1041 1221 IPR036389 GO:0004525|GO:0006396
Phco7g00646 1667 CDD RIBOc 1049 1213 IPR000999 GO:0004525|GO:0006396
Phco7g00646 1667 Pfam Helicase conserved C-terminal domain 398 503 IPR001650 -
Phco7g00646 1667 Gene3D - 1576 1656 - -
Phco7g00646 1667 SUPERFAMILY RNase III domain-like 1242 1406 IPR036389 GO:0004525|GO:0006396
Phco7g00646 1667 FunFam Endoribonuclease dicer-like 1 1238 1407 - -
Phco7g00646 1667 FunFam Endoribonuclease dicer-like protein 33 271 - -
Phco7g00646 1667 Gene3D Ribonuclease III domain 1239 1409 IPR036389 GO:0004525|GO:0006396
Phco7g00646 1667 SMART ultradead3 34 233 IPR014001 -
Phco7g00646 1667 Gene3D Ribonuclease III domain 1031 1211 IPR036389 GO:0004525|GO:0006396
Phco7g00646 1667 Pfam Type III restriction enzyme, res subunit 51 202 IPR006935 GO:0003677|GO:0005524|GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00646 Phco-Chr7 4900713 4919168 Dispersed/Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00646 7 4900713 4919168 Phco7g00646 7 4900713 4919168 ECH
Phco8g01996 8 21329204 21339348 Phco7g00646 7 4900713 4919168 ECH
Phco7g02645 7 45351029 45368226 Phco7g00646 7 4900713 4919168 ECH