LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco7g00636	ATGCAAATTCGTGGTTCTACATTTAGACAAGTATATTTGGCCATCGTTCTAGCATGGCTTACTTTGTTTGAAGGAAATATGATGGTTGTCAGTGGTGGTGGTGGTGGTGGTAGTGGAGGTGGTGGTGGTGGTTTCAATTACAAGGAGGCTCTCACCAAGTCCCTTATCTTCCTTGAGGCACAACGTTCAGGGAAACTTCCCAAAAATAATAGGGTGCCCTGGAGAGGAGACTCAGCACTCGATGATGGAAAACTCGTTAACATGGACCTTGTTGGAGGATACTATGATGCAGGGGACAATGTGAAATATGGTCTCCCCATGGCTTTCACCATTACTACGCTAGCATGGGCTGCTGTTTCTTACAATTCAGAATTTAAAGCAGCAAAAGAGTTGGATAATCTTCACGCTGCCATTCGTTGGGGTACTGATTATTTTCTCAAAGCTAGTTCTCGAAGCAAAACATTATACGTAGAGGTAGGGGACCCACATAAGGATCACAAGTGTTGGATGTCACCAGAACGTATGAAGGTAAAGAGAACGGTTAAGATGATTGGTGAAGGCATGCCCGGGAGTGAAATCGCAGCAGAAACTGCAGCTGCAATGGCAGCTTCTTCCATTGCTTTTGGATCCACAGATCGTATATATTCCCGTACTCTTCTCAACAAAGCTAAATTGCTTTTCGATATGGCCAAATCGCACAAAGGAACCTATGATGGAGAGTGTCCCTTCTACTGCTCTTATTCCGGCTTCAATGACGAAATGATGTGGGCAGCAACATGGCTATACCTTGCTACGAAGAGTTCAATGTATATCAAGTACATATTAGAAGAATCCAAGAGTGCTTCTGTAGCAGAATTTAGTTGGGACCTTAAGTATGCTGGAGCTCAAATCCTTCTTAGCCAGTTATATTTCGAAGGTGAAAAGAAGTTGGAGAGAATCAAAACCCAAGCAGATAGTTTCGTATGCTCTGTCCTTCCTGATAGTCCCTACAGCCAGGTTAAATTGACTCCTGGTGGCTATATTCATTTAAGAGACGGAGCCAACTCGCAGTATGCAACCAGCGCAGCTTTCTTGTTCAGTGTATACAGTGACTTGCTTGCCAAATATAAAGGCAAAGTTGTTTGTGGGGACAAAACGTTTGGCGCTCCCCGTCTCCTTGCTTTTGCTAAGAAACAAATGGATTACCTTCTAGGGAAAAACCCTGAAGGAAGATCGTACATGGTAGGATTTGGAAATAACCCACCAACGCAAGCTCACCACAGAGGTGCTTCGGTGCCGGCATTGAAAAAGGGTGAAGAAGAAGTGTCTTGTGGGACGAGCTTCTCAAGATGGTTTAAGAAAGATGAACCTAACATCCATGAACTCACTGGTGCCATTGTGGGTGGACCTGACATCAATGACAAGTTCAAAGACAAACGTTGGGAGTCACCCTACACTGAACCATGCACCTACGTCAATTCCCTAGCTGCTGGAGTTCTAGCTAAGCTTGCATCTGTGTATTGA	1503	0.4444	MQIRGSTFRQVYLAIVLAWLTLFEGNMMVVSGGGGGGSGGGGGGFNYKEALTKSLIFLEAQRSGKLPKNNRVPWRGDSALDDGKLVNMDLVGGYYDAGDNVKYGLPMAFTITTLAWAAVSYNSEFKAAKELDNLHAAIRWGTDYFLKASSRSKTLYVEVGDPHKDHKCWMSPERMKVKRTVKMIGEGMPGSEIAAETAAAMAASSIAFGSTDRIYSRTLLNKAKLLFDMAKSHKGTYDGECPFYCSYSGFNDEMMWAATWLYLATKSSMYIKYILEESKSASVAEFSWDLKYAGAQILLSQLYFEGEKKLERIKTQADSFVCSVLPDSPYSQVKLTPGGYIHLRDGANSQYATSAAFLFSVYSDLLAKYKGKVVCGDKTFGAPRLLAFAKKQMDYLLGKNPEGRSYMVGFGNNPPTQAHHRGASVPALKKGEEEVSCGTSFSRWFKKDEPNIHELTGAIVGGPDINDKFKDKRWESPYTEPCTYVNSLAAGVLAKLASVY	500

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco7g00636	500	SUPERFAMILY	Six-hairpin glycosidases	44	498	IPR008928	GO:0005975
	Phco7g00636	500	Gene3D	-	42	500	IPR012341	GO:0005975
	Phco7g00636	500	FunFam	Endoglucanase	43	500	-	-
	Phco7g00636	500	PANTHER	ENDO-1,4-BETA-GLUCANASE	31	497	-	-
	Phco7g00636	500	Pfam	Glycosyl hydrolase family 9	47	493	IPR001701	GO:0004553\|GO:0005975
	Phco7g00636	500	ProSitePatterns	Glycosyl hydrolases family 9 (GH9) active site signature 2.	395	421	IPR018221	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco7g00636	Phco-Chr7	4839457	4842461	Transposed

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco7g00636	7	4839457	4842461	Phco7g00636	7	4839457	4842461	ECH