Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00628 ATGGAGAGGTTTTCGTCTCACCGGCGTCGTTCCGATGGAGACAGTACTTCCGCTTCACCTGAGGACAATCGCCGGAAGCGCATCAGAGTTTATTTTGATTTCGATGGCGCTCATTCTACAATTGCGAGTTCTTCGAATTCTGGGAAATCCAGTGCATCTGCCGAGTATGGGGATTATAATGATCTTCAAGAGGAGACTAACTTTGATGAAGGAGATGACAGTGACATCGCAAATGTAGATGATCTAGTAGCCAAGATGGATCTTACGGATGATTTGTTGCACATGGTTTTCTCCTTTTTGGATCACTCCAATCTCTGCAAAGCTGCCAGGGTTTGTAAGCAGTGGCGAACTGCTAGTGCTCATGAAGACTTTTGGAAGAGTTTGAATTTTGAAGATCGTAACATATCTGTTGAGCAATTCGAGGACATCTGTAGGCGTTATCCTAAAATCACAACAATCTGCTTGTCCGGTCCTCCATCTTACCAGCTTGTAATGAAGGCCGTCTCTTCGTTAAGAAATCTTGAGGCTTTAACATTGGGAAGAGGAAATATAATGGATAGCTTTTTCCATGCTTTAGCTGATTGTTCTATGTTGAGGAGACTGAGCATCAATGATGCTATACTTGGCAGTGGTATTCAGGAAATATCAGTTAATCACGACAGACTGTGTCATCTCCAGTTGACAAAGTGCCGTGTGATGCGAATAGCAGTCAGGTGCCCACAACTTGAAACCATGTCCTTGAAGCGCAGTAACATGGCTCAGACTGTACTCAACTGCCCCCTTTTGCAAAAGCTTGATATAGGGTCTTGCCACAAACTTCCTGATTCTGCTATTCGATCAGCTGTTACATCATGCCCACAATTAGTTTCTTTGGACATGTCTAATTGTTCATGTGTTAGTGATGAAACATTAAGGGAAATAGCCCAGAACTGTGCTAACCTTAGTTTCCTTGATGCATCATACTGCCCAAATGTATCCCTGGAGACTGTTCGACTGCCAATGTTAACAATTCTGAAGCTTCACAGTTGTGAGGGCATCACTTCAGCTTCAATGGCTGCAATAGCTTATAGTTACATGCTGAAGGTTTTGGAGCTTGATAATTGTAGCCTATTGACATCAGTGTCTTTAGATCTTCCTCGCTTGCGGAAGATTAGATTGGTTCATTGTCGCAAATTTGCCGATTTGAACTTGATGACCCTGAAGCTGTCTTCTATTTTGGTGTCCAATTGTCCTGTGCTCCATCGTATAAACATCACATCAAATTCACTTAAAACATTAACTATACCAAAGCAGGACAGCTTAACCACATTGGCTTTGCAATGCCAATCTTTGCAAGAAGTGGATCTCTCTGAGTGTGAATCTTTGAATAACTCTGTATGCAATGTTTTTAATGATGGCGGAGGCTGTCCAGTGTTGAAATCGTTAGTTCTTGATAATTGTGAGAGTTTGACATCGGTTCAATTCATCAGTACCTCTTTGAACTGTCTCTCGCTTGGTGGTTGCCGGGCGATAACTAATCTTGATCTCACATGCCCTAATCTGGAGAAACTTGTTTTGGATGGCTGTGATCATTTAGAAAGAGCATCATTTTGTCCAGTTGGTCTTTCATCCCTCAATTTAGGAATATGTCCTAAATTGAGCACACTCAGCATCGAAGCACCTTATATGGTCTCACTTGAGTTGAAAGGATGTGGTGTACTATCTGAAGCGTTCATTAATTGTCCACTCTTAACATCTCTCGATGCCTCCTTTTGCAGCCAACTAACTGATGACTGCTTGTCTGCTACAACTGTCTCATGCCCACTGATTGAATCATTGATATTGATGTCATGCCCATCAATTGGTTCAGACGGTCTTCGATCTTTATATTGTCTTCCAAATTTGACTGTTCTTGACTTATCGTACACTTTCTTGGTGAACTTGCAGCCTGTTTTTGATTCTTGTTTACAGCTAAAGGTGTTAAAGCTGCAAGCATGCAAATATCTCACTGAAACATCACTTGAACCTCTTTACAAAGGAGGGGCTTTACCAGCACTTCAGGAGTTGGACTTGTCTTATGGAACTTTTTGTCAGTCAGTCATAGATGAGCTTCTTGCTTGCTGCACAAATCTCACTCATGTGAGCTTGAATGGCTGTTTGAATATGCATGATTTGAATTGGGGATGCAGTTGTGGGCAGAGTAAGAATTTGCCTGCTGTAAACACCCTATACAGGGCAAGTTCTAATGAGAATGTTCCCGAATCAAGTGAGCAATCCCCTCGCTTGTTGCAAAACCTAAATTGTGTTGGGTGTCCAAATATTAGGAAGGTTGTCATTCCATTGAGAGCAAATTGTTGTCATTTGTTAATTTTAAACCTTTCGCTGTCTGCAAATTTGAAAGAGGTTGATGTTACTTGTCTCAACCTATGCTTTCTTAATTTAAGCAATTGTTCCTCTTTGGAAATTTTGAAGCTAGAGTGTCCAAGATTGACTAGTCTATTCCTTCAGTCTTGCAATGTTGACGAGGAAGCTGTTGAAGCTGCTATATCAAAATGCACTATATTGGAGACTCTTGATGTTCGCTTTTGTCCAAAGATAAGCTCAATGAGCATGGGAAGATTACGCACGATTTGTTCAAGTTTGAAGCGTATATTCAGCAGTTCGTCAACTTTGTTGCCTTGA 2661 0.4138 MERFSSHRRRSDGDSTSASPEDNRRKRIRVYFDFDGAHSTIASSSNSGKSSASAEYGDYNDLQEETNFDEGDDSDIANVDDLVAKMDLTDDLLHMVFSFLDHSNLCKAARVCKQWRTASAHEDFWKSLNFEDRNISVEQFEDICRRYPKITTICLSGPPSYQLVMKAVSSLRNLEALTLGRGNIMDSFFHALADCSMLRRLSINDAILGSGIQEISVNHDRLCHLQLTKCRVMRIAVRCPQLETMSLKRSNMAQTVLNCPLLQKLDIGSCHKLPDSAIRSAVTSCPQLVSLDMSNCSCVSDETLREIAQNCANLSFLDASYCPNVSLETVRLPMLTILKLHSCEGITSASMAAIAYSYMLKVLELDNCSLLTSVSLDLPRLRKIRLVHCRKFADLNLMTLKLSSILVSNCPVLHRINITSNSLKTLTIPKQDSLTTLALQCQSLQEVDLSECESLNNSVCNVFNDGGGCPVLKSLVLDNCESLTSVQFISTSLNCLSLGGCRAITNLDLTCPNLEKLVLDGCDHLERASFCPVGLSSLNLGICPKLSTLSIEAPYMVSLELKGCGVLSEAFINCPLLTSLDASFCSQLTDDCLSATTVSCPLIESLILMSCPSIGSDGLRSLYCLPNLTVLDLSYTFLVNLQPVFDSCLQLKVLKLQACKYLTETSLEPLYKGGALPALQELDLSYGTFCQSVIDELLACCTNLTHVSLNGCLNMHDLNWGCSCGQSKNLPAVNTLYRASSNENVPESSEQSPRLLQNLNCVGCPNIRKVVIPLRANCCHLLILNLSLSANLKEVDVTCLNLCFLNLSNCSSLEILKLECPRLTSLFLQSCNVDEEAVEAAISKCTILETLDVRFCPKISSMSMGRLRTICSSLKRIFSSSSTLLP 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00628 886 SUPERFAMILY L domain-like 567 880 - -
Phco7g00628 886 ProSiteProfiles F-box domain profile. 82 128 IPR001810 GO:0005515
Phco7g00628 886 FunFam F-box/LRR-repeat protein 15 80 329 - -
Phco7g00628 886 FunFam F-box/LRR-repeat protein 15 641 726 - -
Phco7g00628 886 FunFam F-box/LRR-repeat protein 15 491 639 - -
Phco7g00628 886 Gene3D Ribonuclease Inhibitor 81 329 IPR032675 -
Phco7g00628 886 Gene3D Ribonuclease Inhibitor 640 742 IPR032675 -
Phco7g00628 886 CDD F-box_FBXO41 90 129 - -
Phco7g00628 886 MobiDBLite consensus disorder prediction 1 26 - -
Phco7g00628 886 Gene3D Ribonuclease Inhibitor 558 639 IPR032675 -
Phco7g00628 886 FunFam F-box/LRR-repeat protein 15 isoform C 737 880 - -
Phco7g00628 886 SUPERFAMILY F-box domain 87 147 IPR036047 GO:0005515
Phco7g00628 886 SMART LRR_CC_2 511 536 IPR006553 -
Phco7g00628 886 SMART LRR_CC_2 820 844 IPR006553 -
Phco7g00628 886 SMART LRR_CC_2 332 357 IPR006553 -
Phco7g00628 886 SMART LRR_CC_2 648 673 IPR006553 -
Phco7g00628 886 SMART LRR_CC_2 600 625 IPR006553 -
Phco7g00628 886 SMART LRR_CC_2 845 876 IPR006553 -
Phco7g00628 886 SMART LRR_CC_2 574 599 IPR006553 -
Phco7g00628 886 SMART LRR_CC_2 285 310 IPR006553 -
Phco7g00628 886 SMART LRR_CC_2 259 284 IPR006553 -
Phco7g00628 886 SMART LRR_CC_2 441 465 IPR006553 -
Phco7g00628 886 SMART LRR_CC_2 469 499 IPR006553 -
Phco7g00628 886 SMART fbox_2 88 128 IPR001810 GO:0005515
Phco7g00628 886 Pfam F-box-like 90 130 IPR001810 GO:0005515
Phco7g00628 886 PANTHER OS10G0396666 PROTEIN 69 883 - -
Phco7g00628 886 Gene3D Ribonuclease Inhibitor 414 552 IPR032675 -
Phco7g00628 886 Gene3D Ribonuclease Inhibitor 789 884 IPR032675 -
Phco7g00628 886 Gene3D Ribonuclease Inhibitor 330 413 IPR032675 -
Phco7g00628 886 SUPERFAMILY L domain-like 165 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00628 Phco-Chr7 4759750 4765159 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00628 7 4759750 4765159 Phco7g00628 7 4759750 4765159 ECH