Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00624 ATGGCTTCTGCTTCTGTTCCGGTGGCTTTGTCTCTGACCTCTGTCACGCACAGCAAGCCTTCATCCCAAGCCTTCTTCAGGCCATTACCCCTACCACAACCAAAGAGGACCCTCTCAACAAAGCCACTCTCAAACTCCAACCTTCGAATTAATGCATCTTTGAAGGAGAAGGCAGTGACAGGACTCACAGCCGCAACCTTCACAGCCTCTATGGTGATCCCAGAGGTGGCTCTTGCTGCTGGATCCGACTTCTCCCCTTCTCTCAAGAACTTTCTATTCAGCATCTTCGCTGGTGGGGTTGTGCTAGTAGCCATACTTGGAGCAGTTGTTGGAGTTTCCAACTTTGATCCGGTAAACCGAGATGCACCTGAGACTCAACACATAATCAGATGGATTGATGAGATTACTCTACCTGATGCAATAAAATCAGAGAAAAAGCTCCCCTTGAAATGCTTACAAATGATTAATAACAGAATAATAGCAGAGCCCAAGTCCGTTCCACCAAAAGGTGAAGAAGCAATGGCTGTGTCCTCTACCACTGCCTCACTATGTCTTCCTGCTAACAATATTCCAACCCCTCAACTCCCAAAATTTGGTTTCTCAAGTACCATTCGTTTTACTCTCAAACCTCGGAGACTGTTACGCATCAGGAGCTCCTCAGCTGAGACCTCTGACACAGATGTAGATGCAGAGAGTTCCATTGAAATTCCCAAGGAACCTTCTTCATTAATTTCAGCTCTAAACGTCGAAAGGATTCTCCGCGGCTTACCAATTACAGATACAGATCATTATGGTAGGCTAGGTGTTCCAAGAGGATGTCCCTTTGACATGGTAGGGGTTGCCTACAGCAATAAGATTCAAGAATTGAAGAGTCAGAATTTAGAGGAGGACGAACTTGAGAAGAAATTGGAACTTCTGAAAGAATCATACATCATCCTGTCCTCAGAAGAAGAAAGAAGAATCTATGACTGGAGCTTGGCCAGAGTAGAGAATACAGAGACATTCATTTGGCCGTTCGAGGTTGACATAACACAGACAAAAATCCCAGAGGAAGATGCTCCACAACTGGACACTGAGGATGTTGGACCAACGAGATTGGTTGGGTATTTCACATTGGGATGGTTAATTCTAGGAGTTGTGTTATCTATATCTATTGCCCTAAACCTATAG 1170 0.4487 MASASVPVALSLTSVTHSKPSSQAFFRPLPLPQPKRTLSTKPLSNSNLRINASLKEKAVTGLTAATFTASMVIPEVALAAGSDFSPSLKNFLFSIFAGGVVLVAILGAVVGVSNFDPVNRDAPETQHIIRWIDEITLPDAIKSEKKLPLKCLQMINNRIIAEPKSVPPKGEEAMAVSSTTASLCLPANNIPTPQLPKFGFSSTIRFTLKPRRLLRIRSSSAETSDTDVDAESSIEIPKEPSSLISALNVERILRGLPITDTDHYGRLGVPRGCPFDMVGVAYSNKIQELKSQNLEEDELEKKLELLKESYIILSSEEERRIYDWSLARVENTETFIWPFEVDITQTKIPEEDAPQLDTEDVGPTRLVGYFTLGWLILGVVLSISIALNL 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00624 389 PANTHER NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT U, CHLOROPLASTIC 174 385 IPR044199 GO:0009535|GO:0010598
Phco7g00624 389 Hamap Photosystem II reaction center X protein [psbX]. 84 122 IPR023431 -
Phco7g00624 389 SUPERFAMILY Chaperone J-domain 260 328 IPR036869 -
Phco7g00624 389 Coils Coil 282 316 - -
Phco7g00624 389 Gene3D Single helix bin 84 121 - -
Phco7g00624 389 FunFam NAD(P)H-quinone oxidoreductase subunit U chloroplastic 244 335 - -
Phco7g00624 389 Gene3D DnaJ domain 258 334 IPR036869 -
Phco7g00624 389 Pfam Photosystem II reaction centre X protein (PsbX) 85 120 IPR009518 GO:0009523|GO:0015979|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00624 Phco-Chr7 4719663 4723814 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00624 7 4719663 4723814 Phco7g00624 7 4719663 4723814 ECH