Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00610 ATGCAAAGACCCAAAACAAAACGCAGCAATTTTTTTCCTCTGGAGCTTGCCAAAACCCCTAAACCCCTGGGAATGAAGAAGGCGAAGAAGAGTGTTGAAGAAAATGGGGGAAAGTTCAGGGGTGCCGAGAGGTCAGCGTATTTCGCACGCAGAGAGGCAGCGAAGGTACTGAGAGTGGTTCTGGAAGGAGACGCGAAGCGCCGCGCTCCTGCCTCCATCAAATCCCTCATCTATCAACCTTCTGTTAGGAACAAGAAAGCCACCTTCGCTCTCCTTTGTGAAACCCTTAAACATCTTCCCATCATCATGGATGTCTTGGAAGCTGCTTCCATTCTCAACACCAAGTGGAAGAGGCAACGAGAATTGGTTTATATCATTGTCTATGATATCCTTTTCGGCCAGGCGGTTCCACTAGTTGGTGATGCAGAGAAGTACCTTATGCGCCACGAAGATGCCCTGCGTTCAGCTCTTAAACAACTTTTGTCACAGAGAAATGTGAAGACTGTTAAACAGTTGATTGCTCTGCAAGAAGTTCCAGATGTTTCGGTACCTCGGTATGTTCGTGTGAATACGCTTAAACTGGATGTTGATTCTGCCTTGTTCGAACTTCAGAAAAATTACTCGGTTCAAAAGGATAATCTACTGCCTGAATTACTGATACTCCCACCAGGCACTGATTTACACGATCATCCTCTTGTAAAAAATGGCAGTATCTTTATGCAAGGTAAGGCAAGTTCCATGGCAGCACCAGCTCTTAGCCCTCAACCAGGATGGGAGGTTATTGATGCATGTGCAGCACCGGGAAACAAAACTATTCACCTTGCTGCCCTTATGATGAGTAGGGGAAAGATTATAGCATGTGAGCTGAAAAAAGAAAGGGTTAAGCGTTTGAAAGACACTATAAATCTATCTGGTGCTTCTAACATACAAGTCCTGAATGAGGATTTCTTGAACATAAATCCCAAGGATCCTTCATATTCTAAGGTGAATGCTATTCTCTTGGATCCTTCCTGCTCTGGTTCTGGCACTGCTGCCTCAAGACTAGACCATCTGCTACCGTCTAAAACAGCAGGTCAGCAGGATACTGATATGGAAAGATTGAATAAGCTTGCAACTTTCCAGAGAAAGGCTCTTCAGCATGCTTTACTCTTTCCAGCTCTTGAAAGAATTGTCTATAGTACATGTTCAATAAACCAAATTGAGAACGAAGATGTCATCAAATCTGTTATTCCCATTGCCGAATCACATGGATTTCACTTGGCCAAGCCCTTCCCCGAGTGGCAATGCCGTGGTCTTCCAGTTTTTGAAGGCTCTGAATGCCTGATTCGGACAGATCCTGCTAAGCATGGTGAGGGTTTCTTCATTGCTTTGTTTGCTAGGAAAGATGCGATCTCTTCGGAGTGTTCAAATAAGAATAAAACTACAATTTTGCACGGCACTCCCGGTATTAAAGACGCGCAAAGAAAGAAGAAACGCATACCGTTTATTAGCACTAACCCATTCAAAATGTGGTTGTATGATCAACTGATGTTGTAG 1536 0.4408 MQRPKTKRSNFFPLELAKTPKPLGMKKAKKSVEENGGKFRGAERSAYFARREAAKVLRVVLEGDAKRRAPASIKSLIYQPSVRNKKATFALLCETLKHLPIIMDVLEAASILNTKWKRQRELVYIIVYDILFGQAVPLVGDAEKYLMRHEDALRSALKQLLSQRNVKTVKQLIALQEVPDVSVPRYVRVNTLKLDVDSALFELQKNYSVQKDNLLPELLILPPGTDLHDHPLVKNGSIFMQGKASSMAAPALSPQPGWEVIDACAAPGNKTIHLAALMMSRGKIIACELKKERVKRLKDTINLSGASNIQVLNEDFLNINPKDPSYSKVNAILLDPSCSGSGTAASRLDHLLPSKTAGQQDTDMERLNKLATFQRKALQHALLFPALERIVYSTCSINQIENEDVIKSVIPIAESHGFHLAKPFPEWQCRGLPVFEGSECLIRTDPAKHGEGFFIALFARKDAISSECSNKNKTTILHGTPGIKDAQRKKKRIPFISTNPFKMWLYDQLML 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00610 511 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 175 461 IPR001678 GO:0008168
Phco7g00610 511 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 184 460 IPR029063 -
Phco7g00610 511 FunFam Putative 28S rRNA (Cytosine-C(5))-methyltransferase 176 240 - -
Phco7g00610 511 Gene3D Sun protein; domain 3 176 240 - -
Phco7g00610 511 FunFam Methyltransferase NSUN5, putative 241 466 - -
Phco7g00610 511 Pfam 16S rRNA methyltransferase RsmB/F 251 458 IPR001678 GO:0008168
Phco7g00610 511 Gene3D Vaccinia Virus protein VP39 241 467 IPR029063 -
Phco7g00610 511 PRINTS RNA (C5-cytosine) methyltransferase signature 443 460 IPR023267 GO:0001510
Phco7g00610 511 PRINTS RNA (C5-cytosine) methyltransferase signature 330 342 IPR023267 GO:0001510
Phco7g00610 511 PRINTS RNA (C5-cytosine) methyltransferase signature 387 403 IPR023267 GO:0001510
Phco7g00610 511 PRINTS RNA (C5-cytosine) methyltransferase signature 232 246 IPR023267 GO:0001510
Phco7g00610 511 PRINTS RNA (C5-cytosine) methyltransferase signature 261 271 IPR023267 GO:0001510
Phco7g00610 511 CDD AdoMet_MTases 260 348 - -
Phco7g00610 511 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 52 460 IPR023267 GO:0001510
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00610 Phco-Chr7 4603183 4607943 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00610 7 4603183 4607943 Phco7g00610 7 4603183 4607943 ECH