Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00562 ATGGAAAACTTACCGATGATCAATGAAGGAAACCACTCTGAGAAAATGGAGGGAAACATATCTGGTCCTGGTGGGAGCCACGCTACTAATATTTTACTAAATCATGACTTTTCTGATGGGCTAAAAGATTGGCATCCCAATTGCTGTTATGGCTATGTAGTTTCTGTTGAATCAGGTCCTCAAAAAGAAATGACAATGGAATCAGATGGCAATTACGCTGTTATTACGGAACGTAAGAAATGCTGGCAGGGTCTAGAGCAAGACATCACAGACAAAATTTCTGTTGGTTCCACTTACATGGTTTCAGCTTTTGTTGGAGTATATGGGCGTACTCCTAAGTCTACTCATGTCAAAGCTACTCTGAAACTAGAACATCACGATTCAGGCACTAGCTACTTGGAAATCGGAGGAACTTCTTGCGTGAAGGGCAGTTGGGAAAAGTTAGAAGGGTCATTTTCGTTGTCAACTATGCCTGATCGAGTTATATTTTATTTGGAAGGACCTTCTCCTGGAGTTGATCTGCTTATAAAATCAGTGAACATTACCTGCTCCAGTCCAAATGATTATGAACATACAGTAATAATGAATTTAATACTGTTAGATGTTTGTGAATTCTACATCTTGAAAATGGAGGGAAACATATCTGGTCCTGGTGGGAGCCACGCTACTAATATTTTACTAAATCATGATTTTTCTGATGGGCTAAACGATTGGCATCCCAATTGCTGTTATGGCTATGTAGTTTCTGTTGAATCAGGTCCTCAAAAAGAAATGACAATGGAATCAGATGGCAATTACGCTGTTATTACAGAACGTAAGAAATGCTGGCAGGGTCTAGAGCAAGACATCACAGACAAAATTTCTGTTGGTTCCACTTACATGGTTTCAGCTTTTGTTGGAGTATATGGGCGTACTCCTAAGTCTACTCATGTCAAAGCTACTCTGAAACTAGAACATCACGATTCAGGCACTAGCTACTTGGAAATCGGAGGAACTTCTTGCGTGAAGGGCAGTTGGGAAAAGTTAGAAGGGTCATTTTCGTTGTCAACTATGCCTGATCGAGTTATATTTTATTTGGAAGGACCTTCTCCTGGAGTTGATCTGCTTATAAAATCAGTGAACATTACCTGCTCCAGTCCAAATGATTATGAACATACAGTAATAATGAATTTAATACTGTTAGATGTTTGTGAATTCTACATCTTGAAAATGGAGGGAAACATATCTGGTCCTGGTGGGAGCCACGCTACTAATATTTTACTAAATCATGATTTTTCTGATGGGCTAAACGATTGGCATCCCAATTGCTGTTATGGCTATGTAGTTTCTGTTGAATCAGGTCCTCAAAAAGAAATGACAATGGAATCAGATGGCAATTACGCTGTTATTACAGAACGTAAGAAATGCTGGCAGGGTCTAGAGCAAGACATCACAGACAAAATTTCTGTTGGTTCCACTTACATGGTTTCAGCTTTTGTTGGAGTATATGGGCGTACTCCTAAGTCTACTCATGTCAAAGCTACTCTGAAACTAGAACATCACGATTCAGGCACTAGCTACTTGGAAATCGGAGGAACTTCTTGCGTGAAGGGCAGTTGGGAAAAGTTAGAAGGGTCATTTTCGTTGTCAACTATGCCTGATCGAGTTATATTTTATTTGGAAGGACCTTCTCCTGGAGTTGATCTGCTTATAAAATCAGTGAACATTACCTGCTCCAGTCCAAATGATTATGAACATACAATAATAAACAAGGGGTGCGTGTCCACCGAAGATGAAAACATCATAATAAATCCCCAGTTTGATGATGGCCTGAATAATTGGTCTGGAAGAGGCTGCAAGATTGCCTTACATGACTCCATGGGAGATGGGAAAATTCTTCCGAAGTCTGGTAAATTCTTTGCATCTGCAACAGAACGTACCCAAAGCTGGAACGGGATTCAGCAGGATATTACTGGAAGAGTGCAGCGCAAGCTTGCCTACGAGGTTACTGTATTAGTTCGGATATTTGGGAACAATGTCACCACTTCTGATGTAAGGGCTACTTTGTGGGTTCAAGCACCAGATCTTCGGGAGCAGTATATAGGCATTGCCAATGTGCAGGCAACAGATAAAGATTGGGTTCAAATGCAGGGAAAATTCCTTCTAAATGGTTCCCCATCAAAAGTAGTAGTTTATTTAGAAGGTCCCCCTCCAGGCACTGACATTCTTGTCAATACTTTGGTTATAAAACATGCAGCTAAAACACCACCTTCAACACCACCAGATTGTGAGATTGCTGCTTTTGGTGTTAACATAATTGAAAACAGTAATCTGGGTAATGGAACCAATGGATGGTTTCCACTTGGTAGTTGTACTTTGAGCGTTCAGAGTGGTTCACCGCGTATAATTCCACCAATGGCAAGAGACTCTCTTGGGCCTCATGAATCCTTGAGTGGGCGCTACCTCCTTGTAACCAATCGCACACAAACATGGATGGGTCCTGCTCAGATGATCACTGATAAATTTAAACTCTTTCTAACTTATCAAGTATCTGCTTGGGTCAGGATCGGTTCCGGATCAACTGGGCCTCAGAATGTTAATGTTGCTCTTAGTGTTGATAACCAGTGGGTCAATGGGGGACAAGTTGAGATTGCTGATGGCAGGTGGCACGAAATTAGTGGGTCTTTTAGAATTGAAAAGCAGGCATCTAAGGTTATGGTTTATATTCAAGGTCCTGCTTCTGGTGTTGATTTAATGATTGCTGGACTTCAAATTTTTGCTGTTGACAGACAAGCGAGGTTTAAATATTTGAGGAGGCAGACAGACAAGATCCGTAAGCGTGATATTACCCTAAAATTCTCTGGGTTGGATTCAATTGGAAATCTTGGAACCTTGGTGAGAGTTAGACAAATACAAAATGATTTTCCCATAGGAACGTGCATCAGTAGAACCAATATTGACAATGAAGATTTTGTAGACTTCTTTGTGAAACATTTTAACTGGGCCGTTTTTGGGAATGAGTTGAAGTGGTATTGGACTGAGCCACAACAAGGGAGTCTGAATTACAAGGATGCTGATGAAATGCTAGACTTATGTCAGAAAAACAAGATAGACACTCGGGGCCATTGTATCTTCTGGGAAGTGGACGGCAATGTTCAGCAATGGATTAAATCACTAAATAAAACTGATTTGATGAAAGCTGTCCAAAACCGCCTGAATGACTTGTTGACTCGCTACAAGGCTAAGTTCAGACACTATGATGTCAACAACGAAATGTTGCATGGCTCGTTTTATCAGGATAGACTAGGTAAGGATATAAGGGCAAACATGTTCAAGACTGCACACCAACTAGATCCATCTGCTACTCTTTTTGTGAATGACTATCATGTTGAAGATGGATGTGACACCAGATCATCCCCAGAAAAGTACATTCAACATATTCTTGATTTGCAACAGCAAGGTGCCCCAGTTGGGGGAATAGGAATTCAAGGTCACATAGATAGTCCTGTGGGGCCTATTGTTTGTTCTGCCCTTGATAAATTGGGCACTCTTGGTATACCAATATGGTTTACTGAGCTTGATGTGTCATCCTCCAATGAATATGTCAGAGCTGATGATCTAGAAGTTATGCTGCGGGAAACTATGGCACACCCAGCAATAGATGGTGTAATGCTCTGGGGATTTTGGGAGTTGTTTATGAGCCGGGAAAATTCACACCTGGTGGATGCAGAAGGGGAACTCAATGAAGCTGGGAAAAGATTCCTTGCTCTCAAACAAGAGTGGTTGTCTCACAGCCATGGTTATGCTGATGCGCAAGGGCAATTCAGCTTCAGAGGCTTCAGTGGAACATACAACGTGGAAGTTGTGACCTTAGCAGAGAAAGTTTCCAAGACATTCGCTGTTGACAAGGGTGACTCCTCACTGGTGGTATCAATCGATTTATAA 3924 0.4134 MENLPMINEGNHSEKMEGNISGPGGSHATNILLNHDFSDGLKDWHPNCCYGYVVSVESGPQKEMTMESDGNYAVITERKKCWQGLEQDITDKISVGSTYMVSAFVGVYGRTPKSTHVKATLKLEHHDSGTSYLEIGGTSCVKGSWEKLEGSFSLSTMPDRVIFYLEGPSPGVDLLIKSVNITCSSPNDYEHTVIMNLILLDVCEFYILKMEGNISGPGGSHATNILLNHDFSDGLNDWHPNCCYGYVVSVESGPQKEMTMESDGNYAVITERKKCWQGLEQDITDKISVGSTYMVSAFVGVYGRTPKSTHVKATLKLEHHDSGTSYLEIGGTSCVKGSWEKLEGSFSLSTMPDRVIFYLEGPSPGVDLLIKSVNITCSSPNDYEHTVIMNLILLDVCEFYILKMEGNISGPGGSHATNILLNHDFSDGLNDWHPNCCYGYVVSVESGPQKEMTMESDGNYAVITERKKCWQGLEQDITDKISVGSTYMVSAFVGVYGRTPKSTHVKATLKLEHHDSGTSYLEIGGTSCVKGSWEKLEGSFSLSTMPDRVIFYLEGPSPGVDLLIKSVNITCSSPNDYEHTIINKGCVSTEDENIIINPQFDDGLNNWSGRGCKIALHDSMGDGKILPKSGKFFASATERTQSWNGIQQDITGRVQRKLAYEVTVLVRIFGNNVTTSDVRATLWVQAPDLREQYIGIANVQATDKDWVQMQGKFLLNGSPSKVVVYLEGPPPGTDILVNTLVIKHAAKTPPSTPPDCEIAAFGVNIIENSNLGNGTNGWFPLGSCTLSVQSGSPRIIPPMARDSLGPHESLSGRYLLVTNRTQTWMGPAQMITDKFKLFLTYQVSAWVRIGSGSTGPQNVNVALSVDNQWVNGGQVEIADGRWHEISGSFRIEKQASKVMVYIQGPASGVDLMIAGLQIFAVDRQARFKYLRRQTDKIRKRDITLKFSGLDSIGNLGTLVRVRQIQNDFPIGTCISRTNIDNEDFVDFFVKHFNWAVFGNELKWYWTEPQQGSLNYKDADEMLDLCQKNKIDTRGHCIFWEVDGNVQQWIKSLNKTDLMKAVQNRLNDLLTRYKAKFRHYDVNNEMLHGSFYQDRLGKDIRANMFKTAHQLDPSATLFVNDYHVEDGCDTRSSPEKYIQHILDLQQQGAPVGGIGIQGHIDSPVGPIVCSALDKLGTLGIPIWFTELDVSSSNEYVRADDLEVMLRETMAHPAIDGVMLWGFWELFMSRENSHLVDAEGELNEAGKRFLALKQEWLSHSHGYADAQGQFSFRGFSGTYNVEVVTLAEKVSKTFAVDKGDSSLVVSIDL 1307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00562 1307 SUPERFAMILY (Trans)glycosidases 958 1258 IPR017853 -
Phco7g00562 1307 SUPERFAMILY Galactose-binding domain-like 762 922 IPR008979 -
Phco7g00562 1307 ProSitePatterns Glycosyl hydrolases family 10 (GH10) active site. 1178 1188 IPR031158 -
Phco7g00562 1307 SUPERFAMILY Galactose-binding domain-like 591 745 IPR008979 -
Phco7g00562 1307 Gene3D - 219 377 - -
Phco7g00562 1307 Gene3D - 758 920 - -
Phco7g00562 1307 Gene3D - 25 183 - -
Phco7g00562 1307 Gene3D - 413 571 - -
Phco7g00562 1307 Gene3D - 586 745 - -
Phco7g00562 1307 Gene3D Glycosidases 955 1262 - -
Phco7g00562 1307 SUPERFAMILY Galactose-binding domain-like 223 379 IPR008979 -
Phco7g00562 1307 PANTHER GLYCOSYL HYDROLASE 749 1299 IPR044846 GO:0004553|GO:0005975
Phco7g00562 1307 FunFam Endo-1,4-beta-xylanase A 956 1258 - -
Phco7g00562 1307 Coils Coil 1233 1253 - -
Phco7g00562 1307 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 955 1250 IPR001000 GO:0004553|GO:0005975
Phco7g00562 1307 Pfam Carbohydrate binding domain 418 557 IPR003305 GO:0016798
Phco7g00562 1307 Pfam Carbohydrate binding domain 764 907 IPR003305 GO:0016798
Phco7g00562 1307 Pfam Carbohydrate binding domain 593 729 IPR003305 GO:0016798
Phco7g00562 1307 Pfam Carbohydrate binding domain 224 363 IPR003305 GO:0016798
Phco7g00562 1307 Pfam Carbohydrate binding domain 30 169 IPR003305 GO:0016798
Phco7g00562 1307 Pfam Glycosyl hydrolase family 10 964 1221 IPR001000 GO:0004553|GO:0005975
Phco7g00562 1307 SUPERFAMILY Galactose-binding domain-like 417 573 IPR008979 -
Phco7g00562 1307 FunFam Glycosyl hydrolase family 10 protein 588 744 - -
Phco7g00562 1307 SMART glyco_10 1001 1251 IPR001000 GO:0004553|GO:0005975
Phco7g00562 1307 SUPERFAMILY Galactose-binding domain-like 29 185 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00562 Phco-Chr7 4209609 4216250 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00562 7 4209609 4216250 Phco7g00562 7 4209609 4216250 ECH