Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00559 ATGATACGAAGCACTGTGTCCTTCTCCAGTCTCAGGAGATTACTTCCTCAGACTACTTCTGCTTCTGCGTCCTCCAAGATAGGAACTTACAATTGGTTTGCTTCTCAGCCCTGTCCTCTTGAGAGCCCCAACCCTACTTACAGTGATGAGGAGTATGCTGATGTGAATTGGGACAACCTTGGATTTGGATTGATGCCTACTGATTATATGTACATTACTAAATGTTGTGAGGGACAAAATTTTGGAGAAGGGCAACTCAGTCGTTATGGAAACATTGAACTGAGTCCATCAGCTGGGGTCCTAAATTATGGTCAGGGATTATTCGAAGGTACAAAAGCATACAGAAAGAAAAATGGGCGCGTGGTACTCTTTCGTCCAGAACAAAATGGCATTCGCATGAAGATTGGTGCAGAAAGAATGTGCATGATATCCCCTTCCATCGAACATTTTGTTCATGCTTTGAAACAGACTGTCTTGGCTAATAAACGTTGGATTCCTCCGCCGGGAAAAGGATCCTTGTATCTTAGGCCTCTGCTATTAGGAACGGGTCCAGTTTTGGGTTTGGCTCCTGCACCTGAATACACATTCCTCATATACGCTTCCCCTGTTCGCAACTACTTCAAGGAGGGTTCGGCTCCGCTCAACTTGCTTGTGGAGGAAAACTTTGACCGTGCTTCTCGCCGCGGCACTGGAAACGTTAAAACCATTTCCAATTATGGACCGGTTTTGATGGCACAAACTAAAGCCAAGAAAAGAGGATTTTCAGATGTGTTGTACCTTGATTCAGCCACCAAGAAAAATCTGGAGGAGGTTTCTTCTTGTAACATTTTTATTGCCAAGGGAAAATGCATCGTTACTCCTGCTACCAATGGAACCATTCTTTCCGGAATTACCCGAAAAAGTGTGATTGAAATTGCCAGTGATCATGGCTATCAGGTAGAAGAGCGTACTGTTGGTGTGGATGAATTGATTGAGGCTGATGAAGTTTTCTGCACAGGAACTGCAGTAGGTGTTGCCCCTGTAGGGAGTATCACCTACCAGAATAAAAGGATGGACTATATAACGGGTTCTGGAACCATTTGTCAAGAGTTGAACGATACCATTTCAGGAATTCAAACTGGTACTATTGAAGATAAGAAGGGATGGATGATCGAAGTTGATTAA 1164 0.4373 MIRSTVSFSSLRRLLPQTTSASASSKIGTYNWFASQPCPLESPNPTYSDEEYADVNWDNLGFGLMPTDYMYITKCCEGQNFGEGQLSRYGNIELSPSAGVLNYGQGLFEGTKAYRKKNGRVVLFRPEQNGIRMKIGAERMCMISPSIEHFVHALKQTVLANKRWIPPPGKGSLYLRPLLLGTGPVLGLAPAPEYTFLIYASPVRNYFKEGSAPLNLLVEENFDRASRRGTGNVKTISNYGPVLMAQTKAKKRGFSDVLYLDSATKKNLEEVSSCNIFIAKGKCIVTPATNGTILSGITRKSVIEIASDHGYQVEERTVGVDELIEADEVFCTGTAVGVAPVGSITYQNKRMDYITGSGTICQELNDTISGIQTGTIEDKKGWMIEVD 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00559 387 PANTHER AMINO ACID AMINOTRANSFERASE 41 386 IPR005786 GO:0004084|GO:0009081
Phco7g00559 387 NCBIfam branched-chain-amino-acid transaminase 83 386 IPR005786 GO:0004084|GO:0009081
Phco7g00559 387 FunFam Branched-chain-amino-acid aminotransferase 215 386 - -
Phco7g00559 387 PIRSF BCAT1 38 387 IPR005786 GO:0004084|GO:0009081
Phco7g00559 387 ProSitePatterns Aminotransferases class-IV signature. 270 299 IPR018300 GO:0003824
Phco7g00559 387 Gene3D - 214 386 IPR043132 -
Phco7g00559 387 Pfam Amino-transferase class IV 106 344 IPR001544 GO:0003824
Phco7g00559 387 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 46 383 IPR036038 GO:0003824
Phco7g00559 387 CDD BCAT_beta_family 93 374 IPR033939 GO:0004084|GO:0009081
Phco7g00559 387 Gene3D - 40 213 IPR043131 -
Phco7g00559 387 FunFam Branched-chain-amino-acid aminotransferase 38 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00559 Phco-Chr7 4174865 4182563 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00559 7 4174865 4182563 Phco7g00559 7 4174865 4182563 ECH