Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00556 ATGGCACCATGTACACACTCATACTGCGGCTGGTTTGATGATGTCAAAGGACGAGTGTTAACGGACATGCTGTCTAGGAAGGCTAGTGAAGACTCTCATGGCCAAAACTCTTCTTACTTTTTAGGATGGCAAGAGTACCAGAAGAATCCTTATCACCTCATTCGAAACCCAACCGGAATCATTCAGATGGGACTTGCAGAGAATCAGCTTTCATTTGACCTTCTTAAATCATGGCTTCAAAGAAATCCTGATATAGTGGGGATGAAGCAAGATGGGGTATCCGTATTTAAAGAGCTTGCTCTGTTCCAAGATTACCATGGATTACCAGCCTTAAAAAACGAACTGGTGGAATTTATGTCCAAAATAAGAGGAAATGGAACAAACTTTGTTCCAGAGAATCTAGTGCTTACAGCTGGTGCCACTCTTGCTAATGAGATTATGATGTTTTGCCTTGCTGATCCAGGAGACGCTTTCATTCTTCCCACACCCTACTATCCTGGGTTTGATAGAGATCTGAAATGGAGAACAGGGGTTGAGATTGTTCCAATGCATTGCTCGAGTTCAAATGGTTTCAGAATCACTTCCTCTGCTTTAAAACAAGCCTATAAAAAAGCACAAAAATTGAATCTCAAAGTGAAAGGGGTGTTAGTAACTAACCCCTCGAACCCACTAGGAATAACGATGACCAGAACGGAACTTAACCACCTAATTGATTTCGCAATTGAGAAGAACATTCACATAATCAGCGATGAAATCTACTCGGGCACGGTGTTCGACCCACCTAAATTCGTGAGCATAATGGAAGTTGTGAACGAGAGAACTAACAGCATCAACAACATCCGAAATCGCATTCACATAATATACAGTCTATCCAAAGACCTTGGAGTACCAGGATTTAGGGTGGGGATGATTTACTCAAATAACGAAATGGTGGTGGATGTTGCAACAAAAATGTCAAGCTTTGGATTGGTTTCCTCACAGACTCAACATTTGGTGGCTAATGTGCTCAAGGACAAGAAGTTCACTTTTAATTACATTGAAGAGACTCAGAGGAGACTGAAGAGGCGCATGGAGATGCTAGTGTGTGGTCTCAGAAATGCAGGGATTCAGTGCTTGAAAAGCAATGCAGGGTTGTTCTGTTGGGTGGACATGAGACATTTATTAAGCTCTGCAACTTTTGAGGCAGAGAAGGAGCTTTGGATGATGATTCTTTGCCATGTTGGGTTGAACATATCTCCTGGCTCTTCTTGCCACTGCTCTGAACCTGGGTGGTTTAGGGTATGCTTTGCCAACATGTCCGAAGCCACGTTAAAAGTTGCAATGCGGCGAATGAAGTCTTTTATAGATTCCACCGTCTCTGTTGTCAACGAGAACGGTTGTACTTATGAACAATCTGTGAACGCCGAAAGAGAGTCAATTGCTAAATGGGTGAACTGA 1437 0.4259 MAPCTHSYCGWFDDVKGRVLTDMLSRKASEDSHGQNSSYFLGWQEYQKNPYHLIRNPTGIIQMGLAENQLSFDLLKSWLQRNPDIVGMKQDGVSVFKELALFQDYHGLPALKNELVEFMSKIRGNGTNFVPENLVLTAGATLANEIMMFCLADPGDAFILPTPYYPGFDRDLKWRTGVEIVPMHCSSSNGFRITSSALKQAYKKAQKLNLKVKGVLVTNPSNPLGITMTRTELNHLIDFAIEKNIHIISDEIYSGTVFDPPKFVSIMEVVNERTNSINNIRNRIHIIYSLSKDLGVPGFRVGMIYSNNEMVVDVATKMSSFGLVSSQTQHLVANVLKDKKFTFNYIEETQRRLKRRMEMLVCGLRNAGIQCLKSNAGLFCWVDMRHLLSSATFEAEKELWMMILCHVGLNISPGSSCHCSEPGWFRVCFANMSEATLKVAMRRMKSFIDSTVSVVNENGCTYEQSVNAERESIAKWVN 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00556 478 FunFam 1-aminocyclopropane-1-carboxylate synthase 3 83 338 - -
Phco7g00556 478 Gene3D - 83 338 IPR015421 GO:0003824
Phco7g00556 478 FunFam 1-aminocyclopropane-1-carboxylate synthase 2 310 443 - -
Phco7g00556 478 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 22 449 - -
Phco7g00556 478 Pfam Aminotransferase class I and II 61 443 IPR004839 GO:0009058|GO:0030170
Phco7g00556 478 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 289 302 IPR004838 GO:0003824|GO:0009058|GO:0030170
Phco7g00556 478 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 209 233 - -
Phco7g00556 478 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 155 176 - -
Phco7g00556 478 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 245 268 - -
Phco7g00556 478 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 315 338 - -
Phco7g00556 478 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 63 89 - -
Phco7g00556 478 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 283 307 - -
Phco7g00556 478 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 96 112 - -
Phco7g00556 478 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 133 153 - -
Phco7g00556 478 CDD AAT_like 102 445 - -
Phco7g00556 478 Gene3D Aspartate Aminotransferase, domain 1 49 443 IPR015422 GO:0003824
Phco7g00556 478 SUPERFAMILY PLP-dependent transferases 23 448 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00556 Phco-Chr7 4135899 4141718 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00556 7 4135899 4141718 Phco7g00556 7 4135899 4141718 ECH