Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00549 ATGAATATGAAGATGGATTCCGATAGAGCGAAGCTGTTCGTAGGGGGCATTTCTCGTGAAACCACCGAAGATGTTCTCAAATACCACTTCGCCAAGTACGGCGTCGTTTTGGACTCCACAATCTCCTTAGACCACAGCACCCGATGCCCTAGAGGTTTCGGCTTCGTCACCTTCTCCGACCTCTCCGCCGCTCATCAAGCCCTCCAAGACACGCATGTTATTCTCGGAAGAACGGTAGAAGTGAAGAAAGCAATTCCCAGGAGTGAACAACAGCAACACCAAAACCAGTTACCCAATAGAGGGGGAGGTAACTATAATAGTAGTTGTGCCTGTAGCAGTGACACCAACGTTAGGACTAAAAAGATTTTTGTAGGGGGTTTACCTGCTGGTATATCTGAGGAGGAGTTTAAGCAATACTTTGAGAGGTTTGGTCGGATAACTGACGTTGTGGTGATGCAGGACAGTGTTACTCACCGGCCTAGGGGGTTTGGGTTCATCACGTTTGATTCCGAGGAATCGGTTCAAAGTGTTATGGTGAGGAGTTTTCATGACTTGAATGGTAGACAGGTGGAGGTCAAGAGGGCTGTTCCCAAAGAGGGGAACCATGGGTATGATGGTTTTAGTAAATTGAGAAGTAAGAGTGAAAGAGGAGTTCCTAAAAGTTTTCCTCCTTACAGTCCTAGGAACATGCTTCCGGGTTTTGCTCCTTTACCGTGGTATAGTAGTGATGGAGTATATGCATATGGGTCTAATGCTCACGGTTGCTGGTACCCTATGAGTGGGTATGGGGGGAACGGGTATGCCATTCCGTCTGATGCTTCTAGGAACTTCTGGTACGGGCCAATGATGGCTGGTCCTCAGGCATGCCAAGTGCCTTATGCTACTGCTGTTCCAAACTTAGCGTATGTCGGGGGTAGGATTGGAATAGTAGGTAGTGGTGTAGGATCTTGGGGGTATGGTGGCATTCTTGGGTCTGGAACAAATTTGAAATTTGATCAACCTTTTATTGGCAACGGATTTGTTCCAGGCAACACGACATTGCATCTTGGTGTAAAGCAGAATGTTGTGGACTCTTCGAGTTTGAAAGGAAGCACTGGTGAAATATCTAGCTGA 1113 0.4708 MNMKMDSDRAKLFVGGISRETTEDVLKYHFAKYGVVLDSTISLDHSTRCPRGFGFVTFSDLSAAHQALQDTHVILGRTVEVKKAIPRSEQQQHQNQLPNRGGGNYNSSCACSSDTNVRTKKIFVGGLPAGISEEEFKQYFERFGRITDVVVMQDSVTHRPRGFGFITFDSEESVQSVMVRSFHDLNGRQVEVKRAVPKEGNHGYDGFSKLRSKSERGVPKSFPPYSPRNMLPGFAPLPWYSSDGVYAYGSNAHGCWYPMSGYGGNGYAIPSDASRNFWYGPMMAGPQACQVPYATAVPNLAYVGGRIGIVGSGVGSWGYGGILGSGTNLKFDQPFIGNGFVPGNTTLHLGVKQNVVDSSSLKGSTGEISS 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00549 370 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 5 292 - -
Phco7g00549 370 MobiDBLite consensus disorder prediction 202 216 - -
Phco7g00549 370 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 79 IPR000504 GO:0003723
Phco7g00549 370 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 179 IPR000504 GO:0003723
Phco7g00549 370 SUPERFAMILY RNA-binding domain, RBD 116 205 IPR035979 GO:0003676
Phco7g00549 370 Gene3D - 116 204 IPR012677 -
Phco7g00549 370 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 86 IPR000504 GO:0003723
Phco7g00549 370 FunFam RNA-binding protein 1 116 206 - -
Phco7g00549 370 CDD RRM2_Hrp1p 121 198 - -
Phco7g00549 370 Gene3D - 2 96 IPR012677 -
Phco7g00549 370 SMART rrm1_1 11 82 IPR000504 GO:0003723
Phco7g00549 370 SMART rrm1_1 121 193 IPR000504 GO:0003723
Phco7g00549 370 MobiDBLite consensus disorder prediction 202 222 - -
Phco7g00549 370 SUPERFAMILY RNA-binding domain, RBD 6 107 IPR035979 GO:0003676
Phco7g00549 370 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 197 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00549 Phco-Chr7 4050293 4051543 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00549 7 4050293 4051543 Phco7g00549 7 4050293 4051543 ECH