Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00540 ATGGAAAAAAAAAGGGTTGGCACAGGCAATGGCAATGGCAATGGCATCCCCTTTGGCCTTTCTGACATTGGTTTTGACCACTTTTGGTGGAAAGAGAAAGAGGAACATGCCCTCAACAGAGCTTTTTCTTCCTTGTTGGTTCTATTCCACGGTTATTTGATGCTGGTCTCTGTTGCTTCAACTATATTTTGTATCATTGGGTACACTGAGGCGCAGTATTTGTTCTTGAAGCCCTGTACTCTGTTCTCTCTCTCCACCTTTCTTTATTGCTCCCTCCCTCCTTTCCCCTCTCCCACACGCTTCTTCTTATCCTCATTCACAATTTTCCCTTTCCCCAACTCCAACTCGCACCTCACCCCTTCAACTTCCACTTATAGAAAAATCAAGTGCACGTATGCAACAATGCCTCCGTACCAAGAAGACCTAGTGGCAACAGAAACAACAACCACGAAGGATGCTAATGGTGTTAGCGTTTTGGATCTGAAAACGTTGATTGAAGAGCTTGAGTCATCCATTGAGGTCCCTTCCGTTTTTATCTGCCCAATCTCGCTGGAGCCAATGCAAGACCCCGTCACCCTTTGCACGGGACAAACCTACGACCGTTCCAACATCCTCAAATGGTTCTCCCTCGGCCACAACACCTGCCCCACAACAATGCAAGACCTTTGGGACGATTCCGTCACGCCCAACACCACTCTCCACCACTTCATCCTCTCCTGGTTCTCGCAGAAGTTCTTGGCCATGAAGAAGAAGCTCGAGGACGTTCAAGGCACCGCCTTGGAGCTCCTGGACACGCTCAAAAGGGTCAAGGGTCAAAACAGAGTTCGCGCCCTCAAACAGCTTCGCAAACTCGTCGATTCCCACCTCTCCACTAGGAAAACCGTCGAGGAAAACAACGGGCTTGCCTTGATTTCTTCCCTGTTGGGTCCTTTCACCTCGCACGCGGTTGGGTCGGAAGCAATTGGGATTCTTGTGAATTTGGATTTGGGTTCGGAGCTGAAGAGGAATCTCATGCAACCCGCCAAGGTTTCTTTGTTGGTGGACATCATGAACGAGGGAACCATCCAGACCAAGATGAATTGCGCCAAGTTGATTCAAATGTTGTTGGTGGAAGGTAACCCCTCCGAGACCGTTGTTTTATCAAGTTTGAGTCTTTTGGTTGGGGTTTTAAGGTTAGTAAGGGATAAAAAACACCCAACAAGCGTTTTAACCGGACTCATATTACTCAAAATCGTGTGTTCGCGTGAATCGGTTAGGAGCACAATTGTAAGCATAGGAGCAGTGCCTCAGCTGATTCAGCTTTTGCCCACTTTGAACAACGAGTGTTTAGAGATAGCCCTTAATATTCTTGAAGTCTTGTCAACACTTCCTGAGGGAAGATTAGCTTTGAAAGAGTGTCCCAATATTATTCCCAGTGTGGTCAAGTTGGTGATGAGAGTCTCAGAAAGTTGCACACAATTCGCATTGTCGATTCTGTGGGCTATTTACAAGCTTGCCCCTGAAGAATGTGCTTCAAAAGCGGTTGAAGCAGGGTTGGCGGCGAAGCTACTTCTAGTGATTCAGAGCGGTTGCAACCCGGTACTAAAGCAGAAATCTGCGGAGTTTTTGAAAATGTGCAGTTTAGATTACTCTTCTAGCATCTTGATTTCTAAGTGTATGCTTACTGCCACAATACAATGA 1680 0.4685 MEKKRVGTGNGNGNGIPFGLSDIGFDHFWWKEKEEHALNRAFSSLLVLFHGYLMLVSVASTIFCIIGYTEAQYLFLKPCTLFSLSTFLYCSLPPFPSPTRFFLSSFTIFPFPNSNSHLTPSTSTYRKIKCTYATMPPYQEDLVATETTTTKDANGVSVLDLKTLIEELESSIEVPSVFICPISLEPMQDPVTLCTGQTYDRSNILKWFSLGHNTCPTTMQDLWDDSVTPNTTLHHFILSWFSQKFLAMKKKLEDVQGTALELLDTLKRVKGQNRVRALKQLRKLVDSHLSTRKTVEENNGLALISSLLGPFTSHAVGSEAIGILVNLDLGSELKRNLMQPAKVSLLVDIMNEGTIQTKMNCAKLIQMLLVEGNPSETVVLSSLSLLVGVLRLVRDKKHPTSVLTGLILLKIVCSRESVRSTIVSIGAVPQLIQLLPTLNNECLEIALNILEVLSTLPEGRLALKECPNIIPSVVKLVMRVSESCTQFALSILWAIYKLAPEECASKAVEAGLAAKLLLVIQSGCNPVLKQKSAEFLKMCSLDYSSSILISKCMLTATIQ 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00540 559 Gene3D - 259 404 IPR011989 -
Phco7g00540 559 SUPERFAMILY ARM repeat 252 539 IPR016024 -
Phco7g00540 559 CDD RING-Ubox_PUB 175 227 IPR045210 -
Phco7g00540 559 Gene3D - 405 556 IPR011989 -
Phco7g00540 559 ProSiteProfiles U-box domain profile. 173 247 IPR003613 GO:0004842|GO:0016567
Phco7g00540 559 PANTHER WDSAM1 PROTEIN 171 545 IPR045185 GO:0061630
Phco7g00540 559 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 160 256 IPR013083 -
Phco7g00540 559 Pfam U-box domain 174 244 IPR003613 GO:0004842|GO:0016567
Phco7g00540 559 SMART Ubox_2 177 240 IPR003613 GO:0004842|GO:0016567
Phco7g00540 559 SUPERFAMILY RING/U-box 171 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00540 Phco-Chr7 3978459 3982411 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00540 7 3978459 3982411 Phco7g00540 7 3978459 3982411 ECH