Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco7g00524 | ATGCATACGCATGTGTGGAAGCAGATCAGAGACAGAGAAGGTGGGAGAGTGCATGCGAACCATTTCGCCAATCGCATAAAATCCTATCGCACTTCGCAGCTCCAATTAGCGAATCACAAAGACATCGTGTCCCCTCACAAGGGCGCTATCAACTCCCTTCAGATTGATTCGACAGAGGGAAGGTATCTGCTCTCTGCCGCCTCCGATGCCTCGGTAGCCGTCTACGACGTTCAACGATCGGCCTCCGCCGCTTCCGAAGCAGCGGCCGCCTTCTCCAAACACAGGTGCTTATTTGTCGTTGACAAGCAGCACCGACAGGCCCACAAATATGCCGTCTCCACAGCCATATGGTATCCCATTGACACCGGTTTGTTCGTCACTGGCTCATACGATCACCACATTAATGTTTGGGATACCAATACCACCCAGGTGGTGGTGAACTTCAAAATGCCGGGAAAGGTGCATAGGACTGCAATGTCTAATTTGTCAACGTCTCACATGCTTATCGCTGCTGGCACTGAGGATGTCCAAGTTCGCCTCTGTGATATTGCTTCCGGGGCTTTTGCTCACACTTTGTCCGGTCACCGTGATGGTGTAATGACTGTTGAATGGTCTAATTCAAGTGAATGGGTATTGGTTACCGGGGGATGTGATGGTGCAATTCGATTTTGGGACATCAGGCGTGCTGGCTGTTTCCAAGTTTTAGATCAATCTCAGACTCAGTTTGGAAGGCGCCCACCTATACTCAAACGGTCCACGATAACTAAGGATTCAAGTACAAAAATGCGTGGTACCCAAAAGAAACATGCTAATGGAAGTGGTAGCAGACAACATCCAATTGGCAGAGTTCCATCCAAGGGACCAATGAAGCAGAGGTTACATCCTGGAATGCTGTCTACTCAGGATCGGGCGACTGCTCATTATGGTGCTGTGACAGGGTTAAAGGCAACAGAGGATGGCATGTATCTACTAAGTGCAGGGTCTGATTCAAGATTAAGGTTGTGGGATGTTCAATCTGGCTGCGACACACTTGTGAACTTTGAAACAGTTCGTCTGCAAATAAATAAACCTCTTCAATTAGCCACCACTCAAGATTCAACCCTTGTTTTTGTTCCGTGCATGAGATCTGTGAAAGCATTTGACATGTGGTCTGGGAACACCTACACAATATTACGTGGCCACTATGAATGTGTGAACTGTTGCTGGTTTAATCAACAAGATCAGGAACTGTACACTGGTGGAAATGATAGACAAATTCTACTCTGGTCACCTGTTAGATCAATTGATGATGAAATGGGTGAAGGACCTGCTGAGGATCAGGATAGCTGGAGTAGTTGA | 1338 | 0.4753 | MHTHVWKQIRDREGGRVHANHFANRIKSYRTSQLQLANHKDIVSPHKGAINSLQIDSTEGRYLLSAASDASVAVYDVQRSASAASEAAAAFSKHRCLFVVDKQHRQAHKYAVSTAIWYPIDTGLFVTGSYDHHINVWDTNTTQVVVNFKMPGKVHRTAMSNLSTSHMLIAAGTEDVQVRLCDIASGAFAHTLSGHRDGVMTVEWSNSSEWVLVTGGCDGAIRFWDIRRAGCFQVLDQSQTQFGRRPPILKRSTITKDSSTKMRGTQKKHANGSGSRQHPIGRVPSKGPMKQRLHPGMLSTQDRATAHYGAVTGLKATEDGMYLLSAGSDSRLRLWDVQSGCDTLVNFETVRLQINKPLQLATTQDSTLVFVPCMRSVKAFDMWSGNTYTILRGHYECVNCCWFNQQDQELYTGGNDRQILLWSPVRSIDDEMGEGPAEDQDSWSS | 445 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco7g00524 | 445 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 391 | 423 | IPR001680 | GO:0005515 | |
| Phco7g00524 | 445 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 323 | 337 | IPR019775 | - | |
| Phco7g00524 | 445 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 192 | 227 | - | - | |
| Phco7g00524 | 445 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 192 | 234 | IPR001680 | GO:0005515 | |
| Phco7g00524 | 445 | FunFam | Transducin/WD40 repeat-like superfamily protein | 6 | 272 | - | - | |
| Phco7g00524 | 445 | Pfam | WD domain, G-beta repeat | 107 | 138 | IPR001680 | GO:0005515 | |
| Phco7g00524 | 445 | Pfam | WD domain, G-beta repeat | 305 | 336 | IPR001680 | GO:0005515 | |
| Phco7g00524 | 445 | Pfam | WD domain, G-beta repeat | 190 | 225 | IPR001680 | GO:0005515 | |
| Phco7g00524 | 445 | Pfam | WD domain, G-beta repeat | 388 | 423 | IPR001680 | GO:0005515 | |
| Phco7g00524 | 445 | PANTHER | DNA EXCISION REPAIR PROTEIN ERCC-8 | 6 | 445 | IPR042238 | GO:0006283 | |
| Phco7g00524 | 445 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 43 | 85 | IPR001680 | GO:0005515 | |
| Phco7g00524 | 445 | MobiDBLite | consensus disorder prediction | 250 | 294 | - | - | |
| Phco7g00524 | 445 | PRINTS | G protein beta WD-40 repeat signature | 125 | 139 | IPR020472 | - | |
| Phco7g00524 | 445 | PRINTS | G protein beta WD-40 repeat signature | 212 | 226 | IPR020472 | - | |
| Phco7g00524 | 445 | PRINTS | G protein beta WD-40 repeat signature | 323 | 337 | IPR020472 | - | |
| Phco7g00524 | 445 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 304 | 340 | - | - | |
| Phco7g00524 | 445 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 212 | 226 | IPR019775 | - | |
| Phco7g00524 | 445 | SMART | WD40_4 | 294 | 336 | IPR001680 | GO:0005515 | |
| Phco7g00524 | 445 | SMART | WD40_4 | 36 | 76 | IPR001680 | GO:0005515 | |
| Phco7g00524 | 445 | SMART | WD40_4 | 93 | 138 | IPR001680 | GO:0005515 | |
| Phco7g00524 | 445 | SMART | WD40_4 | 384 | 423 | IPR001680 | GO:0005515 | |
| Phco7g00524 | 445 | SMART | WD40_4 | 185 | 225 | IPR001680 | GO:0005515 | |
| Phco7g00524 | 445 | FunFam | Excision repair cross-complementation group 8 | 285 | 426 | - | - | |
| Phco7g00524 | 445 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 105 | 147 | IPR001680 | GO:0005515 | |
| Phco7g00524 | 445 | MobiDBLite | consensus disorder prediction | 250 | 273 | - | - | |
| Phco7g00524 | 445 | Gene3D | - | 6 | 426 | IPR015943 | GO:0005515 | |
| Phco7g00524 | 445 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 304 | 345 | IPR001680 | GO:0005515 | |
| Phco7g00524 | 445 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 391 | 423 | - | - | |
| Phco7g00524 | 445 | SUPERFAMILY | WD40 repeat-like | 43 | 424 | IPR036322 | GO:0005515 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Phco7g00524 | 7 | 3868152 | 3871444 | Phco7g00524 | 7 | 3868152 | 3871444 | ECH |