Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00250 ATGCTATCGTTTCACTCATGTGGATGTTGCGGCGTTTCAACATCCACAGCGTTCCATTTCCAATTCCGAACCTCACCTTCTTCTTCACTCTTTCTCTATGCTACGAGCTATAAATTTCGTTCTACCATAGCGAGGGCTGCCTCTGGTTTCACCGGTGAATCAGACTCCGATGGAGAGAGAAAATTGAACTTCTCCGGTGTGCGGTTGGAGGAGGCTGTCGATAGCAGAGTAGGATCTGCAAAACTAAGACTCGATAGTTGGATCTCTTCCCGCATTAACGGCATTAGTAGAGCACGCGTTCAATCAAGTATCAAATCGGGACTCGTTCATGTAAACGGTCGTGTCGTTGATAAGGCTTCTTTCAACGTCAAAGCTGGGGATCAGATCAAATGCACAATCGCAGAGTTGCAGAAGTTGAGGGCTGTGCCAGAAAATATACCTTTGGATATAGTTTATGAAGATGAGCATGTTCTAGTCATAAATAAACCTGCACACATGGTTGTGCACCCAGCTCCTGGAAATACGTCGGGGACGCTTGTCAATGGCATTCTTCACCATTGCAATCTTCCGAATGTTGAATTTTCTAAAGAGGAAGGTCTTTCAGATACAGAAGATTGTGATGATGAGGTCAATAGCTATGGCTCCCTGGCCAGTTCTTGTGAAGGATCACATTCTAGACCGTCTATGTCATCAATTCGCCCAGGGATTGTACACAGATTGGACAAAGGCACAAGTGGGTTACTCGTTGTTGCTAAGGATGAGCATTCACATATGAAATTATCAGAACAATTTAAGCAACGCACCATCAAGAGGGTTTATGTTAGTCTTACGGCGGGGGTACCCAGTCCAATTTCTGGGCGAGTTGATGTTCCAGTTGGCCGTGATCTTAATAACCGGTTGCGTATGACTGCTGTAGCTGGACCAGTTAATTCTAGAAAGGCCCGTCATGCTGCTAGTAGGTACAAAGTAATTGAGATACTTGCTGGGGGAAGTTGCTCATTGGTTGAGTGGAAGTTGGAAACTGGACGCACTCATCAGATCCGTGCTCATGCTAAGTACTTGGGAGTACCTTTACTCGGTGATGAGGTGTATGGAGGGACAAAAAGCATGGTCTTGTCGTTGCTAAGGCCCCGAACTCCCATCAGTTTGCATGGCAAAATTGTACAAATGGTTTCTAGGCTAGATAGGCCTTGCCTTCATGCTTTGACACTCGGGTTTCAGCATCCCCATACAGGGGAGCAGGTGCACTTTTCATGTGAACCCCCTCTAGACTTCGATGAGATTTTGAGCCAGCTTCGTAGAATTGGTAGTGAGAGTGTTTCTTTCTCAAAGCCTTCAAATTGA 1344 0.4576 MLSFHSCGCCGVSTSTAFHFQFRTSPSSSLFLYATSYKFRSTIARAASGFTGESDSDGERKLNFSGVRLEEAVDSRVGSAKLRLDSWISSRINGISRARVQSSIKSGLVHVNGRVVDKASFNVKAGDQIKCTIAELQKLRAVPENIPLDIVYEDEHVLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNVEFSKEEGLSDTEDCDDEVNSYGSLASSCEGSHSRPSMSSIRPGIVHRLDKGTSGLLVVAKDEHSHMKLSEQFKQRTIKRVYVSLTAGVPSPISGRVDVPVGRDLNNRLRMTAVAGPVNSRKARHAASRYKVIEILAGGSCSLVEWKLETGRTHQIRAHAKYLGVPLLGDEVYGGTKSMVLSLLRPRTPISLHGKIVQMVSRLDRPCLHALTLGFQHPHTGEQVHFSCEPPLDFDEILSQLRRIGSESVSFSKPSN 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00250 447 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 86 429 - -
Phco7g00250 447 ProSiteProfiles S4 RNA-binding domain profile. 82 155 - -
Phco7g00250 447 Pfam RNA pseudouridylate synthase 156 351 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Phco7g00250 447 SMART s4_6 82 147 IPR002942 GO:0003723
Phco7g00250 447 SUPERFAMILY Pseudouridine synthase 142 433 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Phco7g00250 447 Gene3D Pseudouridine synthase 139 421 - -
Phco7g00250 447 Gene3D - 69 138 IPR036986 GO:0003723
Phco7g00250 447 CDD PseudoU_synth_RluA_like 157 406 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Phco7g00250 447 ProSitePatterns Rlu family of pseudouridine synthase signature. 237 251 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Phco7g00250 447 Pfam S4 domain 83 129 IPR002942 GO:0003723
Phco7g00250 447 SUPERFAMILY Alpha-L RNA-binding motif 81 169 - -
Phco7g00250 447 CDD S4 83 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00250 Phco-Chr7 1717546 1723238 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00250 7 1717546 1723238 Phco7g00250 7 1717546 1723238 ECH