Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00248 ATGGCTTTGATCAAATCATGCGCACGCTTGCGCCACTCCCTTTCACCGCTCCTACCCCGCACTTTCAACCAACACTGTTCTTCAGTTTCACTTCCCGAACCTCTTCTCCAACCCGATCCAAATGACACATGCCAAACTCCAAACCTATCCCCCGAGGAAACCACCTTAGCCGACAAACTCCACGCCGCCATCAAAGATCACCACCGCAGAAACCCCACACCAAACCCTAACGCCGCTCCCCCCACTCCCAACCTTACCATCCCCGACCTCTCCCTTGACTTCTCCGCGCTCTCCGCCGCTCAAACACTCTCCCCCGCGGTCGCCCGCCGCGTCATCGAGAAATGCGGCGCTGTCCGCCACGGCATCCCCTTATTCCAATCCCTCGCGTTCTTCAACTGGGCCACCTCGCTTGACGGATTCCCCCCCTCGCCGGAGCCCTACGAAGAGATGCTCGACCTCGCCGGAAAGCTGAGACATTTCGACCTCGCGTGGCATGTCATCGACCTCATGAAGACTCGCGGCGTCGAAATCAGCGTTCACACGTTCTCCGCTCTCGTCCGCCGCTACGTGAGGGCCGGATTACCTGCGGAGGCGGTGCACGCTTTTAACCGTATGGAGGACTATGGCTGCACCCCCGATAAGGTTGCGTTTTCAATTGTGATTAGTAGCTTGTGTAAAAAAAGAAGGGCAAATGAGGCTCAATCGTTTTTTGAGAGTCTCAAGCATAAGTTTGAGCCTGATGTTTTAGTATACACTAGTTTGGTTTATGGGTGGTGTCGTGCTGGTAACATATCTAAGGCTGAAGAGGTGTTTAGTGATATGAAGAGGGCTGGGATTAAGCCTAATGTTTATACTTACAGCATTGTGATTGATTCGTTGTGTCGATGCGGACAAATTACGCGTGCTCATGATGTTTTCGCCGAGATGATTGATTCAGGGTGTGATCCTAATGCTGTTACTTTCAATAGTTTGATGCGGGTTCATGTGAAGGCTGGGAGGACTGAGAAGGTATTGCAGGTTCACAATCAGATGAAGAGGCTTGGTTGTCCTGCAGATACCATCAGCTACAATTTCATCATTGAGAGTCATTGTAGGGATGAGAATCTTGATGAGGCTGTGAAGATTCTCAATTTGATGGTCAAGAAAGGGGTTGCTCCCAATGCGTCCACTTTCAATTGTGTTTTTGGATGCGTAGCTAAATTGCATGATGTGAATGGTGCGCACAGGATGTATGCCAGAATGAAGGAGCTGAAGTGCCAGCCCAATACGTTGACTTATAATATATTGATGAGGATGTTTGCTGAGTCGAAATCTACTGATATGGTTCTGAAAATGAAGAAGGAAATGGATGAGAATCAGGTTGAACCTAATGTAAACACTTACCGAATTTTGATTTCGATGTTTTGTGAAATGAAGCACTGGAACAATGCTTACAAGTTGGTAAAGGAAATGGTTGAAGAAAAATGCCTAAGACCGAATCTGTCCGTTTATGAAACGGTTCTGGAGCTGCTCAGAAACGCTGGACAGTTGAAAAAGCATGAAGAGTTGGTGGATAAGATGGTTGCGAGGGGATTCGTCACTCGCCCATTGTAG 1593 0.4871 MALIKSCARLRHSLSPLLPRTFNQHCSSVSLPEPLLQPDPNDTCQTPNLSPEETTLADKLHAAIKDHHRRNPTPNPNAAPPTPNLTIPDLSLDFSALSAAQTLSPAVARRVIEKCGAVRHGIPLFQSLAFFNWATSLDGFPPSPEPYEEMLDLAGKLRHFDLAWHVIDLMKTRGVEISVHTFSALVRRYVRAGLPAEAVHAFNRMEDYGCTPDKVAFSIVISSLCKKRRANEAQSFFESLKHKFEPDVLVYTSLVYGWCRAGNISKAEEVFSDMKRAGIKPNVYTYSIVIDSLCRCGQITRAHDVFAEMIDSGCDPNAVTFNSLMRVHVKAGRTEKVLQVHNQMKRLGCPADTISYNFIIESHCRDENLDEAVKILNLMVKKGVAPNASTFNCVFGCVAKLHDVNGAHRMYARMKELKCQPNTLTYNILMRMFAESKSTDMVLKMKKEMDENQVEPNVNTYRILISMFCEMKHWNNAYKLVKEMVEEKCLRPNLSVYETVLELLRNAGQLKKHEELVDKMVARGFVTRPL 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00248 530 Gene3D Tetratricopeptide repeat domain 450 523 IPR011990 GO:0005515
Phco7g00248 530 Pfam PPR repeat 319 349 IPR002885 -
Phco7g00248 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 352 386 IPR002885 -
Phco7g00248 530 SUPERFAMILY TPR-like 216 427 IPR011990 GO:0005515
Phco7g00248 530 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 197 525 - -
Phco7g00248 530 NCBIfam pentatricopeptide repeat 180 213 IPR002885 -
Phco7g00248 530 NCBIfam pentatricopeptide repeat 319 352 IPR002885 -
Phco7g00248 530 NCBIfam pentatricopeptide repeat 354 388 IPR002885 -
Phco7g00248 530 NCBIfam pentatricopeptide repeat 425 458 IPR002885 -
Phco7g00248 530 NCBIfam pentatricopeptide repeat 284 318 IPR002885 -
Phco7g00248 530 NCBIfam pentatricopeptide repeat 390 423 IPR002885 -
Phco7g00248 530 NCBIfam pentatricopeptide repeat 250 283 IPR002885 -
Phco7g00248 530 NCBIfam pentatricopeptide repeat 460 492 IPR002885 -
Phco7g00248 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 457 491 IPR002885 -
Phco7g00248 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 387 421 IPR002885 -
Phco7g00248 530 Gene3D Tetratricopeptide repeat domain 337 449 IPR011990 GO:0005515
Phco7g00248 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 316 IPR002885 -
Phco7g00248 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 422 456 IPR002885 -
Phco7g00248 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 281 IPR002885 -
Phco7g00248 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 213 243 IPR002885 -
Phco7g00248 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 178 212 IPR002885 -
Phco7g00248 530 Pfam PPR repeat family 421 469 IPR002885 -
Phco7g00248 530 Pfam PPR repeat family 246 295 IPR002885 -
Phco7g00248 530 Pfam PPR repeat family 178 226 IPR002885 -
Phco7g00248 530 Pfam PPR repeat family 352 398 IPR002885 -
Phco7g00248 530 Gene3D Tetratricopeptide repeat domain 112 240 IPR011990 GO:0005515
Phco7g00248 530 Gene3D Tetratricopeptide repeat domain 241 336 IPR011990 GO:0005515
Phco7g00248 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 317 351 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00248 Phco-Chr7 1705313 1706905 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00248 7 1705313 1706905 Phco7g00248 7 1705313 1706905 ECH