Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00242 ATGCCTACACTTGTTTCTGAGGCATTCCAAGCCCATAGCGCAGAAGCCTTGAGCTTGAAGCCTGTTTTCAGTGCCTCGGGCATTAAGGGCAAGCGAGTCACTGCATTGTCACCAAAACAAAATGCACTTACTGATTTCATTCAAACACTCATTGCGGAAAACCCAGACATTGACTCCCCTTTCGGAGTCCTGGATTTGGGGGTCGTTATGGGCTTGATGGACAAATGGGCCACCAAGCTCCCCACGGTTCAGCCCTTCTACGCCGTCAAGTGCAACCCCAACCTCTCCCTCATCGGCGCTCTCGCCGCCCGCGGCGCCAGCTTCGACTGCGCCAGCAAAGCCGAGATCGAAGCCATCTTATCCCTCGGAGTCTCACCTGACCGCATCATCTACGCCAACCCTTGCAAATCCGCATCCCACATCAGATACGCCGCCACCGTAGGCGTCAACGTCACAACCTACGACTCTAAAGACGAGGTAGAAAAGATACGCAAATGCCACCCCACGTGCGAGTTGCTCCTCCGCATCAAGCCGCAGCAAGACAGTGGAGCGCGCTCCAGCTTGGGCCTCAAATATGGCGCGCTTCCTGAAGAAGTTCCGGAGCTTCTGAGCATGGCTCACGCTGCGGGACTCAAAGTGACCGGCGTGTCCTTCCACATTGGAAGTGGTGGAGGCGACGTGCAAGCTTACCACGGAGCCATATCTGCGGCTAAGTCCGTCTTCGACGCGGCTTCCCGGCTGGGCATGCCAAGAATGCGCGTTCTCGACATCGGCGGCGGCTTCACCTCCGGGCCCATGTTCGACGCCGCGGCTATGAAAATCAACGCGGCGATTCAAGGCAGCTTCGGGAATGAAGAGGAGCTGGTGGTTATCGCCGAGCCGGGTCGTTACTTTGCGGAAACGGCTTTCACGTTGGCCTCAAAGGTTATCGGGAAACGCGTGAGAGGAGAGTTGAGGGAGTATTGGATTGACGATGGAATTTATGGAACCCTTAATAACATTGTATTTGACTACGCTACTGTTACGTGCATGCCACTCGCTTGCACCTCGAAACCTGAGGATCCTTCTTGCAGGGATTTAAAAACCTACTCTTCTACCGTTTTTGGACCAACTTGCGATTCACTTGACACTGTCCTGACGGATTACCAGCTTCCGGAACTGCAATTGAACGATTTCCTTGTGTTCCCGAACATGGGTGCTTACACTACTTCCTCCAGCACTAACTTCAATGGGTTTAGCTCCTCAGTGAAGTCCACATTCCTTGCTTATTCCCAACCCTATCACGCTGGAACAGAGCATGTTCTAGTAGAATCCAAAACTGAAGATGGGCGTTTCTCAAATGTGTTTTGTTCTTGA 1356 0.5324 MPTLVSEAFQAHSAEALSLKPVFSASGIKGKRVTALSPKQNALTDFIQTLIAENPDIDSPFGVLDLGVVMGLMDKWATKLPTVQPFYAVKCNPNLSLIGALAARGASFDCASKAEIEAILSLGVSPDRIIYANPCKSASHIRYAATVGVNVTTYDSKDEVEKIRKCHPTCELLLRIKPQQDSGARSSLGLKYGALPEEVPELLSMAHAAGLKVTGVSFHIGSGGGDVQAYHGAISAAKSVFDAASRLGMPRMRVLDIGGGFTSGPMFDAAAMKINAAIQGSFGNEEELVVIAEPGRYFAETAFTLASKVIGKRVRGELREYWIDDGIYGTLNNIVFDYATVTCMPLACTSKPEDPSCRDLKTYSSTVFGPTCDSLDTVLTDYQLPELQLNDFLVFPNMGAYTTSSSTNFNGFSSSVKSTFLAYSQPYHAGTEHVLVESKTEDGRFSNVFCS 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00242 451 PRINTS Ornithine decarboxylase signature 325 338 IPR002433 GO:0006596
Phco7g00242 451 PRINTS Ornithine decarboxylase signature 129 153 IPR002433 GO:0006596
Phco7g00242 451 PRINTS Ornithine decarboxylase signature 386 399 IPR002433 GO:0006596
Phco7g00242 451 PRINTS Ornithine decarboxylase signature 85 112 IPR002433 GO:0006596
Phco7g00242 451 PRINTS Ornithine decarboxylase signature 366 376 IPR002433 GO:0006596
Phco7g00242 451 PRINTS Ornithine decarboxylase signature 159 181 IPR002433 GO:0006596
Phco7g00242 451 PRINTS Ornithine decarboxylase signature 59 83 IPR002433 GO:0006596
Phco7g00242 451 SUPERFAMILY PLP-binding barrel 58 302 IPR029066 -
Phco7g00242 451 CDD PLPDE_III_ODC 58 415 - -
Phco7g00242 451 FunFam Ornithine decarboxylase 69 298 - -
Phco7g00242 451 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 72 299 IPR022644 GO:0003824
Phco7g00242 451 Pfam Pyridoxal-dependent decarboxylase, C-terminal sheet domain 300 399 IPR022643 GO:0003824
Phco7g00242 451 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 signature 2. 245 262 IPR022657 -
Phco7g00242 451 PANTHER ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE 30 421 IPR002433 GO:0006596
Phco7g00242 451 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 58 415 IPR009006 GO:0003824
Phco7g00242 451 SUPERFAMILY Alanine racemase C-terminal domain-like 284 413 IPR009006 GO:0003824
Phco7g00242 451 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 87 105 IPR022653 -
Phco7g00242 451 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 107 119 IPR000183 GO:0003824
Phco7g00242 451 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 290 309 IPR000183 GO:0003824
Phco7g00242 451 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 210 223 IPR000183 GO:0003824
Phco7g00242 451 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 87 105 IPR000183 GO:0003824
Phco7g00242 451 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 399 412 IPR000183 GO:0003824
Phco7g00242 451 Gene3D Alanine racemase 69 298 IPR029066 -
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00242 7 1660297 1661652 Phco7g00242 7 1660297 1661652 ECH