Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00217 ATGGGGAACAGAGGTGTGTCAACGTTGTTACTCCTGTTCTGCTTCTTCTTCTTCTCAATCAATTTGGTTCCTTCTGCTCTCGCTATTTGGCTTACCGCACCCTCCAGTGGTACCAAGTGTGCTCTGAAGAAATCCAACACAACGTCGTCGTTTTGGCCGACTATGTCGTTATACCCAGTGATCACTCCCAAAACCCCACCATCGCCGTCAAGCACTGGAGTTGAACCTGGTTTAGAGCAAGAGATTGTTCTTCCTCGAGATTCATATCTTCAGGATGAACTGTTACCAATGGTACAATCAAGAAATTTGACACTGGCTTTTTCATCTGAAAGCTCTGTTGAAGAAGAGTTGAAAAGAGAAAGTACTGCAGATGCTACTACTGTATTGGTCAGCTATCTTGTGATGTTTGCTTATATATCACTTACTTTAGGGGATACACTGCACCCTTCATTTTTCTATATTTCTTCAAAGGTGTTACTTGGTCTTTCTGGAGTCATTCTTGTTATGTTGTCTGTCCTTGGGTCGGTTGGATTTTTTAGTGTGCTTGGTGTAAAATCTACTCTGATCGTCATGGAAGTTATCCATTTTCTTGTCCTAGCTGTTGGGGTGGATAATATGTGTATACTAGTTCATGCTGTAAAAAGACAACGACTGGAGTTGCCCTTAGAAGGACGAATAAGCAATGCACTTGCTGAAGTTGGACCATCAATAACATTGGCCAGTGTTTCAGAGGTTTTAGCATTTGCAGTTGGGAGTTTTATTTCCATGCCTGCAATCCGTGTGTATTCCATGTTTGCTGCATTGGCTGTTCTTTTGGACTTTCTCCTGCAAGTTACCGCTTTTGTAGCTTTGATAGTTCTCGACTCTTTGCGAGCAGAGGATAAGAGGGTTGATTGTTTTCCATGCATAAAACCTCCTTGCTGTGCTGCTGGGGACAGCTCCTGTGATTCAGTTGGAACATGTAAAGATTGCACAACGAATGATCGTCCATCTACAACTCAATTTAGGGAGAAACTGCCATGGTTCCTTAGTTCTCTGCCATCTGCTGATTGTGCAAAAGGTGGTCATGGAGCATACACCAGCAGTGTTGAACTGAAAGGCTACAACAATAGCATTATTCCAGCCTCATCATTTCGTACATATCATACCCCACTTAACAAGCAGATTGACTACGTTAATTCTATGATGGCTGCTCGAGAGTTCAGTTCAAGAGTTTCTGATTCTTTAAAGAATTCAGAATTTAAGGAGGACGTGGTGGCAATGGAGCCTTGA 1272 0.4253 MGNRGVSTLLLLFCFFFFSINLVPSALAIWLTAPSSGTKCALKKSNTTSSFWPTMSLYPVITPKTPPSPSSTGVEPGLEQEIVLPRDSYLQDELLPMVQSRNLTLAFSSESSVEEELKRESTADATTVLVSYLVMFAYISLTLGDTLHPSFFYISSKVLLGLSGVILVMLSVLGSVGFFSVLGVKSTLIVMEVIHFLVLAVGVDNMCILVHAVKRQRLELPLEGRISNALAEVGPSITLASVSEVLAFAVGSFISMPAIRVYSMFAALAVLLDFLLQVTAFVALIVLDSLRAEDKRVDCFPCIKPPCCAAGDSSCDSVGTCKDCTTNDRPSTTQFREKLPWFLSSLPSADCAKGGHGAYTSSVELKGYNNSIIPASSFRTYHTPLNKQIDYVNSMMAAREFSSRVSDSLKNSEFKEDVVAMEP 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00217 423 PANTHER NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1 93 304 - -
Phco7g00217 423 FunFam NPC intracellular cholesterol transporter 1 87 298 - -
Phco7g00217 423 SUPERFAMILY Multidrug efflux transporter AcrB transmembrane domain 115 287 - -
Phco7g00217 423 Gene3D Multidrug efflux transporter AcrB transmembrane domain 92 293 - -
Phco7g00217 423 ProSiteProfiles Sterol-sensing domain (SSD) profile. 124 287 IPR000731 -
Phco7g00217 423 Pfam Sterol-sensing domain of SREBP cleavage-activation 154 304 IPR000731 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00217 Phco-Chr7 1455230 1462155 Dispersed/Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00217 7 1455230 1462155 Phco7g00217 7 1455230 1462155 ECH