Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00141 ATGGACATGGTGATAGTTGCTGGTCATTATTATTCTTCCAAAATTTCGCGCTCCGCCTTCACATCGATTCTGCTGCACTTCCAAAAGAGTTGGTTGTGCAGTTCTTGTTTTCAGACACCATCTTTAAGTTCCTGTCGGCTTTTGAGTTCTGTGATGGCCAGTGATTTTTCTGTCATCTCCAATGGAGACAGCAATGGCAATGTAAATCCTCAACCTAATCAGCAAAGGACGTACCAAGTGGTAGTGGCTGCCACCCAAGATTGGGGCATTGGTAAGGATGGGAAGTTACCCTGGAGGTTGCCTACTGATCTCAAATTTTTCAAGGAGATCACTGAGAAAACATCTGATCCTGGAAAGAAGAATGCCATTGTAATGGGAAGGAAAACATGGGAGAGTATCCCTCTTCAGTACAGGCCTCTTTCTGGTCGGCTTAACGTTGTTCTTACTCGCTCAGGCAGCTTTGATATTGCAACGGCAGAGAATGTTGTTATATGTGGAAGTATGTATTCTGCACTGGAGCTACTAGCTGCTTCTCCTTACTCTCTGTCAATTGAGAAAGTATTTGTTATTGGAGGTGGTCAGATCTTTAGAGAGGCTCTCAATGCACGTGGATGTGAAGCCATCCACTTAACAGAAATTCAGTCAAACATTGAGTGCGACACTTTTATGCCTTCAGTTGATTTCACTATATTTCGGCCATGGTACTCATCCTTTCCCAAAGTGGAAAACAACATACGCTATTCTTTCATCACTTATGTGCGTGTAAGGAGTTCTGCTGTGGAGTCCCTGAGTCAGAATATTGATCCACTTATTGATAATAATTCTGATTCCATAAAATTTGAGGTCAAGGATTTTTCTTTTCTTCCTAAAATGATTTTTGAGAGACATGAGGAGAATATGTATCTTAAGCTGGTTCAAGATATCATTACCGAAGGTACAATAAAGGGTGATAGGACAGGGACTGGTACCTTGTCAAAATTTGGTAGCCAGATGAGATTCAATTTACGCAGAAGCTTTCCTCTTCTAACAACTAAGAAAGTATTTTGGCGAGGGGTTGTGGAAGAGCTTCTTTGGTTTATTAGTGGCTCAACAAATGCCAAGGTGCTACAGGAAAAAAAGATTCATATATGGGATGGCAATGCATCCAGAGAATACCTTGATGGTGTTGGTTTGACAGAGAGGGAGGAGGGCGACTTGGGACCTGTTTATGGGTTTCAATGGAGGCACTTTGGAGCCACATACACTGATATGCATGCTGACTACTCCGGCCAAGGGTTTGATCAGCTTTTAGATGTTATTAACAAGATAAAGCATAATCCTGATGATCGGCGAATCATTCTCTCTGCGTGGAATCCAGCTGATCTTAAATTAATGGCACTTCCACCTTGCCACATGTTTGCGCAGTTTTATGTAGCACACGGGGAGTTATCATGTCAAATGTATCAGCGATCTGCAGACATGGGCCTGGGCGTTCCATTTAATATTGCATCTTATGCCCTCCTGACATGCATGATTGCTCATGTTTGTGATCTAATTCCTGGTGATTTTATCCATGCTATTGGGGATACACATGTTTACAGCAATCATGTGAGGCCTTTGCAGGAGCAGCTCCATAACCTTCCAAAACCTTTTCCAACTTTGAAGATAAATCCAAAGAAGAAAGATATAGATTCTTTTGTGGCTGCTGATTTCGAGCTCATAGGCTATGATCCTCACCAGAAGATTGATATGAAGATGGCTGTCTAA 1746 0.421 MDMVIVAGHYYSSKISRSAFTSILLHFQKSWLCSSCFQTPSLSSCRLLSSVMASDFSVISNGDSNGNVNPQPNQQRTYQVVVAATQDWGIGKDGKLPWRLPTDLKFFKEITEKTSDPGKKNAIVMGRKTWESIPLQYRPLSGRLNVVLTRSGSFDIATAENVVICGSMYSALELLAASPYSLSIEKVFVIGGGQIFREALNARGCEAIHLTEIQSNIECDTFMPSVDFTIFRPWYSSFPKVENNIRYSFITYVRVRSSAVESLSQNIDPLIDNNSDSIKFEVKDFSFLPKMIFERHEENMYLKLVQDIITEGTIKGDRTGTGTLSKFGSQMRFNLRRSFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKKIHIWDGNASREYLDGVGLTEREEGDLGPVYGFQWRHFGATYTDMHADYSGQGFDQLLDVINKIKHNPDDRRIILSAWNPADLKLMALPPCHMFAQFYVAHGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLIPGDFIHAIGDTHVYSNHVRPLQEQLHNLPKPFPTLKINPKKKDIDSFVAADFELIGYDPHQKIDMKMAV 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00141 581 Gene3D Dihydrofolate Reductase, subunit A 62 256 IPR024072 -
Phco7g00141 581 CDD TS_Pyrimidine_HMase 301 534 IPR023451 -
Phco7g00141 581 NCBIfam thymidylate synthase 300 581 IPR000398 GO:0004799|GO:0006231
Phco7g00141 581 FunFam Possible thymidylate synthase 292 581 - -
Phco7g00141 581 ProSitePatterns Thymidylate synthase active site. 443 471 IPR020940 GO:0004799|GO:0006231
Phco7g00141 581 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 280 581 IPR036926 -
Phco7g00141 581 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 290 581 IPR036926 -
Phco7g00141 581 PIRSF DHFR-TS 56 581 IPR012262 GO:0004146|GO:0004799|GO:0006730
Phco7g00141 581 Pfam Dihydrofolate reductase 79 254 IPR001796 GO:0004146|GO:0046654
Phco7g00141 581 CDD DHFR 81 253 IPR001796 GO:0004146|GO:0046654
Phco7g00141 581 PANTHER THYMIDYLATE SYNTHASE 1 100 581 IPR045097 GO:0016741
Phco7g00141 581 FunFam Bifunctional dihydrofolate reductase-thymidylate synthase 60 255 - -
Phco7g00141 581 SUPERFAMILY Dihydrofolate reductase-like 72 254 IPR024072 -
Phco7g00141 581 PRINTS Thymidylate synthase family signature 476 502 IPR000398 GO:0004799|GO:0006231
Phco7g00141 581 PRINTS Thymidylate synthase family signature 458 473 IPR000398 GO:0004799|GO:0006231
Phco7g00141 581 PRINTS Thymidylate synthase family signature 432 451 IPR000398 GO:0004799|GO:0006231
Phco7g00141 581 PRINTS Thymidylate synthase family signature 339 360 IPR000398 GO:0004799|GO:0006231
Phco7g00141 581 PRINTS Thymidylate synthase family signature 514 531 IPR000398 GO:0004799|GO:0006231
Phco7g00141 581 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 77 254 IPR001796 GO:0004146|GO:0046654
Phco7g00141 581 Hamap Thymidylate synthase [thyA]. 298 581 IPR000398 GO:0004799|GO:0006231
Phco7g00141 581 ProSitePatterns Dihydrofolate reductase (DHFR) domain signature. 89 111 IPR017925 GO:0004146
Phco7g00141 581 Pfam Thymidylate synthase 300 581 IPR023451 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00141 Phco-Chr7 909448 915879 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00141 7 909448 915879 Phco7g00141 7 909448 915879 ECH