Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00060 ATGGAAACTCGTAGTCGGAAGCGGGCGGAGGCTTCCTCAGCTGCCCCTTCATCCTCGTCCACCACTCGTTCCGCCAAGCGTTCTCGTCTTTCTTCTTCCTCTTCTTCGATCCCGAACACCCCAACTGTTAATACACGTTCTCGTTCGGCCAGGACTAACACCACCACCACCACAACAACAACCAATTCCGTTTCTCTCATGGACCCCACCAACGAATCCTCCGGGTCAAGACGTGATCGTCGTGGCAAGAATTTGGAAAGGGACAATTCGGACAAAGGGAAGGAGAAGGAACAGGATGTAGAAAGAGAGCGAGTCTTGGCGTTGAACATGGAGAGTGAAGGTGTTGGGGACGATGATGATAATTATAGTGACGGTGGTGTGCATCGGAGTTTGACGTCTGCTAGTACCCTTCAAGGGCTTCTTCGGAAACTTGGTGCTGGTTTGGATGATCTGCTTCCTGCCACGGCTATGGGTGGCTCTGCGTCCTCTTCTCATCTGAGTGGTAGAATCAAGAAAATTCTGGCTGGATTGCGTGCTGAGGGAGAAGAAGGTCGTCAGCTCGAGGCATTGTCGCAGCTTTGTTTCATGCTTTCCCTTGGCACCGAAGAATTCCTTAGTACGTTTTCCGTCGACTCGTTTGTTCCTGTGTTAGTGGGGTTGCTTAATCATGAGAGCAACCCCGATGTTATGCTACTTGCGGCCAGGGCGCTTACCCATTTATGCGACGTTCTTCCCTCATCCTGCGCTGCTGTTGTGCATTACGGGGCAGTGTCTATATTCTGTGCGAGGCTGCTTACGATAGAGTATATGGACTTGGCTGAACAGTCTCTTCAAGCGCTAAAGAAGATTTCGCAGGAGCACCCAACTGCCTGTCTTCGAGCTGGAGCTCTGATGGCTGTACTTTCTTACTTGGACTTCTTCTCAACAGGAGTTCAGCGGGTAGCATTGTCTACTGCTGCAAATATGTGCAAAAAGCTTCCTCCTGATGCAGCTGACTTTGTAATGGAAGCTGTTCCTCTTTTGACAAACCTTCTTCAGTACCATGACTCCAAGGTTCTGGAACATGCCTCTGTTTGTCTAACTCGAATAGTGGAAGCATTTGCCTCATCTCCAGACAAATTAGATGAATTATGCAATCATGGACTGGTAACACAAGCTGCCTCTCTCATTTCTACCAGCAGTTCTGGAGGCGGTCAGGCTTCTCTCAGCACTCCAACATATACCGGTCTGATCCGCCTTCTTTCCACATGTGCCAGTGGATCCCCTCTTGGACCCAAAACATTACTTCTCCTTGGAATTAGTGGCATTCTGAAAGATATACTATCCGGTTCTGGTGTTTCTTCTATCACCTCTGTTTCACCAGCATTAAGTAGGCCGGCAGATCAGATATTTGAGATTGTGAATCTGGCAAATGAACTTCTGCCTCCATTGCCACATGGAACCATTTCTCTTCCTGTCAGCTCCAACTTGTTTGTGAAAGGGTATTTTGTGAAAAAATGTCCTTCTGGCAGTTCCGGACAAGAAGACAGCACCAATGAAAATGTCCATGAGATATCAGCTCGTGAGAAATTATTAAACGATCAGCCGGAGTTACTTCAGCAATTTGGGATGGATCTCCTCCCAGTTTTAATGCAGATATATGGTGCCAGTGTCAATGGTCCTGTTCGCCACAAATGTCTTTCTGTCATTGGAAAATTGATGCATTTCAGCACAGCTGAGATGATCCAGTCTTTGTTGAGTGTAACAAATATATCAAGTTTCTTAGCTGGTGTGTTAGCATGGAAAGATCCGCATGTTTTAGTACCTGCCTTGCAGATTTCAGAAATTCTTATGGAAAAGCTTCCTGGAACTTTCTCTAAGATGTTTATCAGAGAAGGTGTGGTCCATGCAGTTGACCAACTTATTTTGGCTGGAAATTCGACCAATATGTCTATACAGACATCTGCTGAGAAGGATATTGATTCTGTAGCTGGAACTCATTCGCGCCCCAGACACTATCGCCTGCGTAGTGGTAATTCAAACCCCGATGCAAACTATTTGGATGATTTGATGAAGAGTCCAGTTCCGGTAAATGTTGGTTTGCCAGCAAGTTCTGTAGAAACCCCAACCACTAGTTCCAGTATTCGGTTGTCTATTAGCTCAGTTGCTAGAGGGTTTAAAGATAAGTACTTTCCTTCTGATCCTGGGTCTATTGAAGTGGGTGTTAGTGATGATCTTTTGCATTTGAAAAATCTCTGCTTAAAGCTGAACACTTGTGTTGATGATAAAAAAACTAAGGCAAAGGGAAAAGTTAAAGCTTCTGGATTTGGTCTGGATGATAATACTACTAACATAGAAGAATATTTGATTGGCGTGATATCTGACATGTTAAAGGAACTTGGCAAAGGTGATGGTGTATCTACTTTTGAATTTATTGGTAGTGGTGTTGTTGAAGCCTTGCTGAGTTATTTATCTTGTGGGTATTTCGCTAAAGATCAGATGTCAGAAACCAGTCTCCCCAAGCTTCGTCAACAGGCACTTGCAAGGTTCAAGTCATTTGTTGCTATTGCACTACCTTTGAGTATTGATAATGAGGCTGTTGCTCCTATGACTGTCTTGGTTCAGAAGCTTCAAAATGCGTTGTCATCCTTGGAGCGCTTCCCTGTAATGCTAAGTAATTCATCTCGTTCATCTAGTGGGAGTGCACGTCTCTCCTCTGGGCTAAGTGCATTATCTCAGCCCATAAAGCTGCGTCTCTGTCGAGCCCAGGGTGAAAAGTCACTTAGGGATTATTCTTCCAATGTGGTACTGATTGATCCATTAGCAAGTTTAGCAGCTATTGAGGAATTTCTGTGGACTCGGGTCCAGCGTAGTGATTCTGGTCAAAAGTCTACTGTAGCTGGTGACAATTCTGAATCTGGAACAGCTCCTGCAGGGGCAGGTGTTTCATCTCCTTGCTCTTATACTCCCTCCACTACCCGTCGTCATTCAACTAGATCCAGATCATCTTTTAATATAGGAGATGCACCTAGAAAAGAAACATCTCAAGGTAAAAGCATCAGTTCATCTAAGAGCAAGGGTAAAGCTGTATTAAAGGCTACACAGGAGGAAGCACGAGGACCCCAAACACGAAATGCTGTTCGTAGAAGAGCAGATCTAGATAAAGATGCTCAAATGAAACCTATAAGTGGAGAATCAACTTCTGAGGATGAAGAATTGGATATATCTCCTGTTGAAATTGATGAGGCTTTGGTCATTGAAGATGATGATATTTCTGATGATGAGGATGAAGACCACGAAGATGTGTTGAGGGATGATTCTCTTCCTCTCTGCTTACCCGACAAAGTACATGATGTGAAATTGGGTGACTCAGCTGAGGAGACTACTGTTGCTCCAGCAACAAGTGATAGCCAGACTAACGCAGCCTCAGTTTCTAGTAGCAAAGCTGTTACTGCCAGGGGATCCGACTCTGCTGATTTTAGAGGTGGGTATTCATCTAGCTCAAGGGGTGCAATGTCATTTGCTGCAGCTGCTATGGCTGGACTTGGATATGCTAATAGCAGAGGTTTCAGGGGTAGCAGAGATAGGCATGGGCGCCTGTTGTTTGGTACTTCTAATGATCCTCCAAAATTAATTTTTACTGCTGCTGGGAAGCAGCTTAATAGGAATTTGACTATATACCAGGCAATTCAAAAACAGCTTGTGCTAGATGAAGATGATGATGAGAGATTGGCTGGCAGTGACTATGTATCCAGTGATGGAAGCAGTCTGTGGGGGGATATTTACACTATCACTTATCAAAAAGCAGAAAACCAGACAGATAAGGCATCTATTGGAGGATCAAGTTCAAATACTTCAAAACCTGCCAAATCTGGCTCTGCCTCAAATTCCAGCCCAGAAGCTAAGTTGCATCAGACTTCTGTTTTAGACAGTATATTGCAGGGAGAATTGCCGTGTGATCTAGAGAAATCTAATCCCACCTACAATATTTTGGCACTCCTGCGTGTGTTAGAGTGTTTGAACCAGCTTGCGCCTCGTTTGAGGGCTCAAATGGTTTCTGATAGCTTTGCTGAGGGAAAAATCTCTAATTTTGATCAGCTAGTTGTTACAACTGGCGCTAGGGTTGTTCCAGAGGAATTCGTTAGTGGTAAGCTTACTCCAAAATTGGCCAGGCAAATACAAGATGCCCTCGCACTATGCAGTGGTAGTCTTCCCTTATGGTGTTATCAGTTGACTAAAGCATGCCCTTTTTTGTTTCCTTTTGAGACTCGACGACAGTACTTCTATTCTACTGCATTTGGGTTATCTCGAGCATTATATCGACTTCAGCAGCAGCAAGGTGCTGATGGTCATGGATCAACAACTGAGAGAGAGATTAGAGTTGGGAGATTACAGCGCCAAAAAGTCCGCGTCTCTAGAAACCGCGTCTTGGATTCTGCTGCAAAAGTTATGGAGATGTATTCTAGCCAAAAAGCAGTGCTTGAAGTTGAATATTTTGGTGAGGTTGGCACTGGCCTGGGCCCCACCCTTGAGTTTTATACAATCTTAAGTCATGATTTACAAAAGGTTGGACTGCAAATGTGGAGATCCCATTCTTCAAATAAACATGTAATGGAGGTTGATGGAGGTGAAAAGAGAGAGAATAGTGTAGGCTCTAGGCCTGATTTGGCTGGAGATGAAGAACTTGTTCAAGCTCCTATGGGTTTGTTTCCTCGGCCCTGGCCTACAAATTCTGATGCATCAGAGGGTAGCCCATTTGCAAAAGTCATAGAGTATTTTCGGCTGCTGGGTCGAGTTATGGCAAAAGCTCTTCAAGATGGACGACTATTGGATCTGCCATTGTCTGTGGCATTCTATAAGCTTGTTCTCGGCCAAGATCTTGATTTGTATGACATTCTGTTCATTGATGCTGAACTTGGGAAGACTTTGCAAGAGTTGAATGCCCTTGTTCGTCGGAAACATTATGTAGAATCTATTGGTGGTAGCTATACTGATACACTTTTTAACCTACATTTTCATGGTGCACCCATTGAAGATCTTTGCTTAGATTTTACACTTCCTGGTTTTCCTGAGTACACCTTGAAACCTGGAGATGAAACAGTCAATATCAACAATTTGGAGGAGTACATATCCTTGGTGGTTGATGCTACAGTCAAGACTGGAACCATGCGGCAAATAGAAGCATTTAGAGCAGGGTTTAATCAGGTTTTTGACATCTCATCTTTACAAATTTTTACTCCTCAAGAACTAGACTATTTGCTTTGTGGCCGCAGGGAGTTGTGGGAGGCTGAGACACTTGCTGATCATATAAAATTTGACCATGGGTACAATGCAAAGAGCCCTCCCATTGTTAATTTACTTGAAATTATGGGAGAATTCACACCGGGGCAGCAGCGTGCCTTCTGTCAATTTGTTACAGGCGCACCTAGGCTGCCACCTGGTGGGCTGGCAGTTCTAAATCCCAAACTAACGATTGTGAGGAAGCTTTCGTCAACTGCAGTTAATACTTCATCAAACGGGAACGGACCTTCAGAATCCGCGGACGATGACTTGCCTAGTGTGATGACATGTGCTAATTACCTGAAGCTTCCTCCTTACTCTACCAAGGAAGTTATGTACAAGAAGCTACTCTATGCAATCAGTGAAGGCCAAGGATCCTTTGATTTATCATGA 5652 0.4434 METRSRKRAEASSAAPSSSSTTRSAKRSRLSSSSSSIPNTPTVNTRSRSARTNTTTTTTTTNSVSLMDPTNESSGSRRDRRGKNLERDNSDKGKEKEQDVERERVLALNMESEGVGDDDDNYSDGGVHRSLTSASTLQGLLRKLGAGLDDLLPATAMGGSASSSHLSGRIKKILAGLRAEGEEGRQLEALSQLCFMLSLGTEEFLSTFSVDSFVPVLVGLLNHESNPDVMLLAARALTHLCDVLPSSCAAVVHYGAVSIFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPPDAADFVMEAVPLLTNLLQYHDSKVLEHASVCLTRIVEAFASSPDKLDELCNHGLVTQAASLISTSSSGGGQASLSTPTYTGLIRLLSTCASGSPLGPKTLLLLGISGILKDILSGSGVSSITSVSPALSRPADQIFEIVNLANELLPPLPHGTISLPVSSNLFVKGYFVKKCPSGSSGQEDSTNENVHEISAREKLLNDQPELLQQFGMDLLPVLMQIYGASVNGPVRHKCLSVIGKLMHFSTAEMIQSLLSVTNISSFLAGVLAWKDPHVLVPALQISEILMEKLPGTFSKMFIREGVVHAVDQLILAGNSTNMSIQTSAEKDIDSVAGTHSRPRHYRLRSGNSNPDANYLDDLMKSPVPVNVGLPASSVETPTTSSSIRLSISSVARGFKDKYFPSDPGSIEVGVSDDLLHLKNLCLKLNTCVDDKKTKAKGKVKASGFGLDDNTTNIEEYLIGVISDMLKELGKGDGVSTFEFIGSGVVEALLSYLSCGYFAKDQMSETSLPKLRQQALARFKSFVAIALPLSIDNEAVAPMTVLVQKLQNALSSLERFPVMLSNSSRSSSGSARLSSGLSALSQPIKLRLCRAQGEKSLRDYSSNVVLIDPLASLAAIEEFLWTRVQRSDSGQKSTVAGDNSESGTAPAGAGVSSPCSYTPSTTRRHSTRSRSSFNIGDAPRKETSQGKSISSSKSKGKAVLKATQEEARGPQTRNAVRRRADLDKDAQMKPISGESTSEDEELDISPVEIDEALVIEDDDISDDEDEDHEDVLRDDSLPLCLPDKVHDVKLGDSAEETTVAPATSDSQTNAASVSSSKAVTARGSDSADFRGGYSSSSRGAMSFAAAAMAGLGYANSRGFRGSRDRHGRLLFGTSNDPPKLIFTAAGKQLNRNLTIYQAIQKQLVLDEDDDERLAGSDYVSSDGSSLWGDIYTITYQKAENQTDKASIGGSSSNTSKPAKSGSASNSSPEAKLHQTSVLDSILQGELPCDLEKSNPTYNILALLRVLECLNQLAPRLRAQMVSDSFAEGKISNFDQLVVTTGARVVPEEFVSGKLTPKLARQIQDALALCSGSLPLWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSTTEREIRVGRLQRQKVRVSRNRVLDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTILSHDLQKVGLQMWRSHSSNKHVMEVDGGEKRENSVGSRPDLAGDEELVQAPMGLFPRPWPTNSDASEGSPFAKVIEYFRLLGRVMAKALQDGRLLDLPLSVAFYKLVLGQDLDLYDILFIDAELGKTLQELNALVRRKHYVESIGGSYTDTLFNLHFHGAPIEDLCLDFTLPGFPEYTLKPGDETVNINNLEEYISLVVDATVKTGTMRQIEAFRAGFNQVFDISSLQIFTPQELDYLLCGRRELWEAETLADHIKFDHGYNAKSPPIVNLLEIMGEFTPGQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKLSSTAVNTSSNGNGPSESADDDLPSVMTCANYLKLPPYSTKEVMYKKLLYAISEGQGSFDLS 1883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00060 1883 MobiDBLite consensus disorder prediction 1 101 - -
Phco7g00060 1883 MobiDBLite consensus disorder prediction 951 1022 - -
Phco7g00060 1883 MobiDBLite consensus disorder prediction 1119 1155 - -
Phco7g00060 1883 MobiDBLite consensus disorder prediction 1121 1146 - -
Phco7g00060 1883 FunFam E3 ubiquitin-protein ligase UPL3 1401 1644 - -
Phco7g00060 1883 MobiDBLite consensus disorder prediction 951 1069 - -
Phco7g00060 1883 Gene3D Hect, E3 ligase catalytic domains 1401 1644 - -
Phco7g00060 1883 SMART arm_5 327 365 IPR000225 GO:0005515
Phco7g00060 1883 SMART arm_5 201 242 IPR000225 GO:0005515
Phco7g00060 1883 SMART arm_5 284 324 IPR000225 GO:0005515
Phco7g00060 1883 SUPERFAMILY ARM repeat 169 653 IPR016024 -
Phco7g00060 1883 Gene3D - 159 477 IPR011989 -
Phco7g00060 1883 MobiDBLite consensus disorder prediction 73 101 - -
Phco7g00060 1883 MobiDBLite consensus disorder prediction 1267 1294 - -
Phco7g00060 1883 SUPERFAMILY Hect, E3 ligase catalytic domain 1453 1876 IPR035983 GO:0004842
Phco7g00060 1883 SMART hect_3 1471 1883 IPR000569 GO:0004842
Phco7g00060 1883 ProSiteProfiles HECT domain profile. 1583 1883 IPR000569 GO:0004842
Phco7g00060 1883 FunFam HECT ubiquitin protein ligase family protein KAK 163 477 - -
Phco7g00060 1883 CDD HECTc 1460 1878 IPR000569 GO:0004842
Phco7g00060 1883 Gene3D Hect, E3 ligase catalytic domain 1754 1881 - -
Phco7g00060 1883 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 10 1883 IPR045322 GO:0006511|GO:0061630
Phco7g00060 1883 MobiDBLite consensus disorder prediction 10 72 - -
Phco7g00060 1883 MobiDBLite consensus disorder prediction 1035 1052 - -
Phco7g00060 1883 Pfam HECT-domain (ubiquitin-transferase) 1541 1883 IPR000569 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00060 Phco-Chr7 385789 395164 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00060 7 385789 395164 Phco7g00060 7 385789 395164 ECH