Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00025 ATGGAAATAGAAATGAAGAGGAATAGGATGATGAGGATGATGATGATATGGAGCGTAGGAGTGGTGTGGATGCTGTTAGTTGGAGGAAGCTACGGAGAGCAGTGTGGAAGGCAAGCAGGAGGTGCACTCTGCCCAGGGGGTCTCTGTTGCAGCCAGTTCGGGTGGTGCGGCTCCACCTCCGACTACTGCGGCAAGGATTGCCAGAGCCAGTGCGGGGGACAGCCGTCTCCTGCTCCTACTGATCTCAGCGCCCTCATACCCAGGTCCACCTTCGACCAGATGCTCAAACATCGCAACGACGGAGCCTGCCCAGCCAGAGGCTTCTACACCTACGATGCCTTCATCGCCGCCGCCAAGGCTTTCCCCAGCTTCGGTACCACCGGAGACACTGCGACTCGCAAGAGGGAGATTGCGGCCTTCTTGGGGCAAACGTCTCACGAAACAACCGGGGGATGGGCCACTGCGCCGGACGGACCATTCGCATGGGGATACTGCTTCGTGAGGGAGAGGAACCCCAGTACCTACTGCTCCGCAACTCCCCAGTTCCCCTGCGCCCCTGGGCAGCAGTACTACGGCAGGGGTCCCATCCAGATATCTTGGAACTACAACTACGGTCAGTGCGGAAGGGCCATTGGGGTTGACTTGATCAACAACCCTGATCTCGTCGCCACTGACCCTGTCATCTCCTTCAAGTCCGCCCTCTGGTTCTGGATGACCCCACAGTCCCCCAAGCCTTCCTCCCACGACGTCATCACCTCTCGATGGACCCCCTCCTCTGCCGACGTCGCCGCCCGCAGGCTTCCCGGCTACGGCACTGTGACGAACATCATCAACGGAGGCCTTGAGTGCGGGCGAGGACAGGATAGCAGGGTTGAAGACCGCATCGGATTCTTCAAGAGATACTGTGATCTGCTTGGAGTTGGTTATGGCAACAACCTTGACTGCTACTCTCAGACCCCATTTGGAAATCCCCTCCTACTCTCTGACCCTGTCACCTCTCAGTGA 1005 0.5841 MEIEMKRNRMMRMMMIWSVGVVWMLLVGGSYGEQCGRQAGGALCPGGLCCSQFGWCGSTSDYCGKDCQSQCGGQPSPAPTDLSALIPRSTFDQMLKHRNDGACPARGFYTYDAFIAAAKAFPSFGTTGDTATRKREIAAFLGQTSHETTGGWATAPDGPFAWGYCFVRERNPSTYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQCGRAIGVDLINNPDLVATDPVISFKSALWFWMTPQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVEDRIGFFKRYCDLLGVGYGNNLDCYSQTPFGNPLLLSDPVTSQ 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00025 334 CDD ChtBD1_GH19_hevein 33 72 - -
Phco7g00025 334 PANTHER CHITINASE-RELATED 30 319 - -
Phco7g00025 334 ProSitePatterns Chitin recognition or binding domain signature. 44 63 IPR018371 GO:0008061
Phco7g00025 334 ProSiteProfiles Chitin-binding type-1 domain profile. 32 73 IPR001002 GO:0008061
Phco7g00025 334 FunFam Basic endochitinase 32 73 - -
Phco7g00025 334 SMART ChitinBD_3 34 71 IPR001002 GO:0008061
Phco7g00025 334 Gene3D - 32 73 IPR036861 GO:0008061
Phco7g00025 334 Gene3D Endochitinase, domain 2 168 224 - -
Phco7g00025 334 CDD chitinase_GH19 86 315 - -
Phco7g00025 334 Gene3D - 85 316 - -
Phco7g00025 334 SUPERFAMILY Lysozyme-like 82 322 IPR023346 -
Phco7g00025 334 SUPERFAMILY Plant lectins/antimicrobial peptides 34 77 IPR036861 GO:0008061
Phco7g00025 334 ProSitePatterns Chitinases family 19 signature 1. 103 125 IPR000726 GO:0004568|GO:0006032|GO:0016998
Phco7g00025 334 Pfam Chitinase class I 86 315 IPR000726 GO:0004568|GO:0006032|GO:0016998
Phco7g00025 334 PIRSF Endochitinase 4 322 IPR016283 GO:0004568|GO:0005975
Phco7g00025 334 ProSitePatterns Chitinases family 19 signature 2. 228 238 IPR000726 GO:0004568|GO:0006032|GO:0016998
Phco7g00025 334 PRINTS Chitin-binding domain signature 42 50 IPR001002 GO:0008061
Phco7g00025 334 PRINTS Chitin-binding domain signature 50 57 IPR001002 GO:0008061
Phco7g00025 334 PRINTS Chitin-binding domain signature 57 64 IPR001002 GO:0008061
Phco7g00025 334 FunFam Endochitinase (Chitinase) 167 224 - -
Phco7g00025 334 Pfam Chitin recognition protein 34 71 IPR001002 GO:0008061
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00025 Phco-Chr7 179028 180032 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00025 7 179028 180032 Phco7g00025 7 179028 180032 ECH