Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00012 ATGGATTCCAGCGGCAATTCTTTACCATCTGCACCTGATGCGGTTAAGAGAAAGGTTTGCTATTTCTATGATCCAGAGGTTGGGAATTACTATTATGGTCAAGGTCACCCTATGAAGCCACATCGTATACGGATGACACACGCTCTTCTTGCTCATTATGGATTGCTTCAGCACATGCAGGTCCATAAGCCATTTCCTGCTAGAGATCGGGACCTTTGTCGTTTTCACGCTGATGATTATGTTGCATTCCTTCGAAGCATAACTCCTGAAACACAGCAGGATCATCTGAGGCAACTCAAACGCTTTAATGTTGGTGAAGATTGTCCTGTTTTTGATGGCCTCTACTCTTTCTGTCAAACTTATGCAGGGGGGTCAGTTGGGGGTGCTGTCAAGTTAAATCATGACCAATGTGATATTGCTGTCAACTGGGCTGGTGGGTTGCATCATGCCAAGAAGTGTGAGGCTTCTGGATTTTGCTATGTTAATGATATAGTCCTCGCAATCTTAGAACTTCTTAAACAACATGAGCGTGTTCTGTACGTGGATATTGATATCCACCATGGAGATGGTGTGGAAGAAGCATTCTATACTACTGACAGAGTCATGACTGTTTCTTTTCATAAGTTCGGAGACTATTTTCCTGGTACTGGGGATGTACGTGATATTGGATATGGAAAAGGAAAATACTACTCTCTTAATGTTCCACTTGATGATGGCATTGATGATGAGAGTTATCATTTCTTGTTCAAACCAATAATTGGCAAAGTAATGGAAGTGTTCAGACCTGGTGCAGTAGTTCTCCAGTGCGGTGCTGATTCTCTATCTGGAGACCGATTGGGATGTTTCAATCTTTCAATTAGGGGACATGCAGAGTGTGTCAAATACATGAGATCATTCAACGTGCCCCTCTTGCTACTAGGTGGTGGTGGCTACACCATTCGGAATGTTGCTCGATGTTGGTGCTATGAGACAGGAGTTGCTCTTGGAATAGAAGTTGATGACAAAATGCCCGAACATGAGTATTATGAATATTTTGGTCCAGATTATACCCTTCATGTTGCCCCAAGTAACATGGAAAACAAGAATTCCCGTCACTTACTTGAAGAAATTCAATCTAAGCTACTTGAGAATCTTTCCAAGCTGCAGCATGCTCCTAGTGTCCAATTTCAGGAAAGGCCTCCGGATTCTGATCTTGGAGAGGCAGATGAAGATCATGACAATGGAGATGAGACATGGGATCCTGATTCTGACATGGACGTTGATGTTGAACGTGGGCTTGTACCAAGCAAAGTAAAGAAAGAAATAGTTGAACCGCTGCTCAATGATCTGGATGACCAAAGAAGAAGTGGAGATCATTTGAGAGGCTCTGATACTGCAGTTGCTGAAACTTGCATGAAGGCTCTAGATATTTCTTCTCAGAAAGCTGACGAAGATAATGTGAAAGTTGAACACAATACTGTGAATGATTTGACCAAAGAGAGGGGCCAAAAGTGCTAA 1497 0.4262 MDSSGNSLPSAPDAVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVHKPFPARDRDLCRFHADDYVAFLRSITPETQQDHLRQLKRFNVGEDCPVFDGLYSFCQTYAGGSVGGAVKLNHDQCDIAVNWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDVRDIGYGKGKYYSLNVPLDDGIDDESYHFLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIRGHAECVKYMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGIEVDDKMPEHEYYEYFGPDYTLHVAPSNMENKNSRHLLEEIQSKLLENLSKLQHAPSVQFQERPPDSDLGEADEDHDNGDETWDPDSDMDVDVERGLVPSKVKKEIVEPLLNDLDDQRRSGDHLRGSDTAVAETCMKALDISSQKADEDNVKVEHNTVNDLTKERGQKC 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00012 498 Pfam Histone deacetylase domain 36 324 IPR023801 -
Phco7g00012 498 MobiDBLite consensus disorder prediction 400 417 - -
Phco7g00012 498 PANTHER HISTONE DEACETYLASE 2-RELATED 6 360 - -
Phco7g00012 498 FunFam Histone deacetylase 15 392 - -
Phco7g00012 498 MobiDBLite consensus disorder prediction 474 498 - -
Phco7g00012 498 SUPERFAMILY Arginase/deacetylase 17 381 IPR023696 -
Phco7g00012 498 PRINTS Histone deacetylase superfamily signature 145 168 IPR000286 -
Phco7g00012 498 PRINTS Histone deacetylase superfamily signature 177 192 IPR000286 -
Phco7g00012 498 PRINTS Histone deacetylase superfamily signature 262 272 IPR000286 -
Phco7g00012 498 PIRSF HDAC_I_euk 3 493 IPR003084 GO:0004407|GO:0016575
Phco7g00012 498 Gene3D Histone deacetylase domain 15 388 IPR037138 -
Phco7g00012 498 MobiDBLite consensus disorder prediction 384 419 - -
Phco7g00012 498 PRINTS Histone deacetylase signature 123 143 IPR003084 GO:0004407|GO:0016575
Phco7g00012 498 PRINTS Histone deacetylase signature 223 236 IPR003084 GO:0004407|GO:0016575
Phco7g00012 498 PRINTS Histone deacetylase signature 71 89 IPR003084 GO:0004407|GO:0016575
Phco7g00012 498 PRINTS Histone deacetylase signature 102 119 IPR003084 GO:0004407|GO:0016575
Phco7g00012 498 PRINTS Histone deacetylase signature 240 258 IPR003084 GO:0004407|GO:0016575
Phco7g00012 498 PRINTS Histone deacetylase signature 164 180 IPR003084 GO:0004407|GO:0016575
Phco7g00012 498 PRINTS Histone deacetylase signature 38 55 IPR003084 GO:0004407|GO:0016575
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00012 Phco-Chr7 70210 81829 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00012 7 70210 81829 Phco7g00012 7 70210 81829 ECH