Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g03058 ATGAACAAGAGGCCTATAACCGCCGTCTACAAGGCCCTTCCTGATCTCTGCCATCGAGAACTCGGCCATCTACCACCCAGAAATTTCGCTCTTCGCTTTGGCGCCTCTGAGGATCTTGTCCTTCGACTTGATGTGCTCAGGAAACTGCGAAAGCACAGGGGTTGTGTCAACACTGTCAGCTTCAATACTGATGGGGACGTTCTGGTGTCCGGTTCTGATGATTGGAGGGTTATTTTGTGGGACTGGCAAACTGGCTCTATTAAACACTCCTTCCATTCTGGTCACACTAACAATGTTTTCCAGGCCAAGATCATGCCTCACTCTGAGGATCGAAGCATTGTCACTTGTGCTGCTGATGGACAGGTTAGACATGCTCAAATTCTTGAAAATGGAGGAGTGGACACTAAGTTTCTGGCCAAGCATCAAGGAAGGGCTCATAAATTGGCTATCGAACCTGGCAGCCCTCATATATTTTATACCTGTGGTGAAGATGGATTAGTACAGCATTTTGATCTCAGAATTGGGGTCGCAACAGAACTTTTTACATGCCAGCCAATCAAGGATACACGGAACTATATGCCAGTCATCCATCTTAATGCTATTGCAATTGATCCAAGGAACCCAAATCTCTTTGCCGTTGCTGGGTCTGATGAATATACTAGACTTTATGATATTCGCAAGTATAAATGGGATGGATCTACTGATTTTGGTCAACCAACCGACTTCTTTTGTCCTCCTCACTTGATTGGTGACGACCAGGTTGGAATAACAGGCTTGGCCTTTTCTGAACAAAGAGAGCTGCTTGTGTCATACAATGATGAGTTTATTTACCTTTTCACCCAAGATATGGGTTTGGGACCCAATCCTGATCTTGGGTCCCATAAATCAATGAACTGTGATGCAGGTGAACTTGGACCTGTGTTGTCTCCATCCAACGTGGATGGTGATGAAAAAATCACCCCGCAAGTTTTTAAGGGACACAGGAATTGTGAGACAGTTAAGGGTGTCAACTTTTTTGGACCCAAGTGTGAGTATGTGGTGAGTGGGTCAGACTGTGGTCGGATTTTCGTATGGAAAAAGAAAGGTGGTCAGCTTATTCGTGTCATGGAAGCAGATAAGCATGTTGTGAATTGCATTGAGTCTCATCCTCATTCAATGGTTCTTGCAAGCAGTGGTATTGAGCATGACATTAAAATTTGGACTCCAAAGGCCCTTGAGAAAGCTACTCTGCCCAAAATTATTGAGCAGAAACCGAGGGCTAGGGGCTGGATGTACCGGATTGCATCTCCTGAAGACCTGATGTTGCAACTGTTCTCACTTCCAAGACGAAGGCTTAGGACAGAAAACAATGGAGAAAACTCAACTACAGATGGAGACCTTCTACAGTTGTTACTCACATTCAATGCTAATAGTGACAGTTCTAATGATGATGATGATGATGATGATGATGATGGTGGTGGTGATACAACCAGTCATCATGACTTGTTCTATGATGGGAATGGTGAGTTGCATAGCATGCTGAATTGTATAACACGACCTGATAAGATTTAA 1551 0.4417 MNKRPITAVYKALPDLCHRELGHLPPRNFALRFGASEDLVLRLDVLRKLRKHRGCVNTVSFNTDGDVLVSGSDDWRVILWDWQTGSIKHSFHSGHTNNVFQAKIMPHSEDRSIVTCAADGQVRHAQILENGGVDTKFLAKHQGRAHKLAIEPGSPHIFYTCGEDGLVQHFDLRIGVATELFTCQPIKDTRNYMPVIHLNAIAIDPRNPNLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPTDFFCPPHLIGDDQVGITGLAFSEQRELLVSYNDEFIYLFTQDMGLGPNPDLGSHKSMNCDAGELGPVLSPSNVDGDEKITPQVFKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFVWKKKGGQLIRVMEADKHVVNCIESHPHSMVLASSGIEHDIKIWTPKALEKATLPKIIEQKPRARGWMYRIASPEDLMLQLFSLPRRRLRTENNGENSTTDGDLLQLLLTFNANSDSSNDDDDDDDDDGGGDTTSHHDLFYDGNGELHSMLNCITRPDKI 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g03058 516 SUPERFAMILY WD40 repeat-like 41 400 IPR036322 GO:0005515
Phco6g03058 516 ProSiteProfiles Trp-Asp (WD) repeats profile. 49 90 IPR001680 GO:0005515
Phco6g03058 516 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 14 484 IPR045151 -
Phco6g03058 516 Pfam WD domain, G-beta repeat 322 359 IPR001680 GO:0005515
Phco6g03058 516 Pfam WD domain, G-beta repeat 45 81 IPR001680 GO:0005515
Phco6g03058 516 Gene3D - 37 403 IPR015943 GO:0005515
Phco6g03058 516 MobiDBLite consensus disorder prediction 470 495 - -
Phco6g03058 516 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 49 81 - -
Phco6g03058 516 SMART WD40_4 189 224 IPR001680 GO:0005515
Phco6g03058 516 SMART WD40_4 242 280 IPR001680 GO:0005515
Phco6g03058 516 SMART WD40_4 131 171 IPR001680 GO:0005515
Phco6g03058 516 SMART WD40_4 362 401 IPR001680 GO:0005515
Phco6g03058 516 SMART WD40_4 84 126 IPR001680 GO:0005515
Phco6g03058 516 SMART WD40_4 317 359 IPR001680 GO:0005515
Phco6g03058 516 SMART WD40_4 42 81 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g03058 Phco-Chr6 51582033 51588087 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g03058 6 51582033 51588087 Phco6g03058 6 51582033 51588087 ECH