Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g03047 ATGGAATACAGAACTGTATCTGGAGTTGCTGGACCATTGGTCATTCTTGACAAGGTTAAGGGACCCAAATTTCAAGAGATTGTTAATATTCGTTTAGGAGATGGATCTACTCGGCGTGGACAAGTTCTAGAGGTTGATGGTGAAAAGGCTGTTGTTCAGGTATTTGAAGGTACATCTGGGATTGACAATAAATTTACAACTGTGCAATTTACTGGAGAGGTATTAAAAACTCCTGTGTCACTGGACATGCTTGGGCGCATATTTAATGGTTCTGGAAAACCAATTGATAACGGTCCACCAATTTTACCGGAGGCATACCTGGATATTTCTGGAAGTTCTATCAATCCTAGTGAGAGAACCTATCCCGAGGAGATGATACAGACAGGAATATCTACAATTGATGTCATGAATTCCATTGCTAGAGGTCAAAAGATCCCTTTATTCTCAGCAGCTGGTCTCCCCCATAATGAAATCGCTGCACAGATATGTCGTCAGGCTGGCTTAGTCAAGCGACTTGAGAAATCTGATAATCTACTTGAGAGTGGTGGAGAAGAGGACAATTTTGCTATTGTTTTTGCAGCTATGGGAGTTAACATGGAGACTGCACAGTTTTTCAAACGTGACTTTGAGGAGAATGGCTCAATGGAGAGAGTGACTCTTTTCCTTAATTTGGCAAACGATCCTACAATAGAGCGAATTATCACTCCTCGTATTGCTCTCACTACTGCTGAATATTTGGCTTATGAATGTGGCAAGCACGTTCTTGTGATACTCACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAGGTATCTGCTGCCCGAGAAGAAGTGCCGGGAAGACGTGGTTATCCTGGATACATGTATACAGATCTTGCAACAATTTATGAACGTGCCGGAAGAATTGAGGGGCGTAAAGGCTCTATTACTCAAATTCCAATTCTAACCATGCCCAACGATGATATTACGCACCCAACTCCTGATCTAACAGGATATATCACTGAGGGGCAGATATACATAGACAGGCAGCTGTATAACAGACAGATATACCCACCAATCAATGTCCTCCCATCACTATCTCGGTTGATGAAGAGTGCTATTGGTGAGGGAATGACCAGAAGGGATCATGCTGATGTGTCCAACCAGCTCTATGCAAATTATGCTATTGGAAAGGATGTTCAGGCAATGAAAGCAGTGGTTGGAGAAGAAGCACTTTCATCAGAGGACCTGCTGTATCTGGAATTTTTGGAGAAGTTTGAGAGAAAGTTTGTTGCCCAGGGAGCTTATGACACCCGCAATATATTCCAGTCACTAGATCTTGCATGGACTTTACTCCGGATTTTCCCTCGTGAACTTCTTCATCGTATACCAGCCAAGACTCTTGATCAGTATTACAGCCGAGATGCTGGTAATTGA 1416 0.4273 MEYRTVSGVAGPLVILDKVKGPKFQEIVNIRLGDGSTRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSDNLLESGGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLYNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHADVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLEKFERKFVAQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQYYSRDAGN 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g03047 471 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 1 468 IPR022879 -
Phco6g03047 471 FunFam V-type proton ATPase subunit B, brain 11 471 - -
Phco6g03047 471 Pfam ATP synthase alpha/beta family, beta-barrel domain 6 72 IPR004100 GO:0046034|GO:1902600
Phco6g03047 471 ProSitePatterns ATP synthase alpha and beta subunits signature. 351 360 IPR020003 GO:0005524
Phco6g03047 471 CDD ATP-synt_V_A-type_beta_C 370 464 - -
Phco6g03047 471 Hamap V-type ATP synthase beta chain [atpB]. 1 469 IPR022879 -
Phco6g03047 471 CDD V_A-ATPase_B 74 368 - -
Phco6g03047 471 PIRSF V-ATPsynth_beta/V-ATPase_B 1 471 IPR022879 -
Phco6g03047 471 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 76 366 IPR027417 -
Phco6g03047 471 CDD ATP-synt_V_A-type_beta_N 2 73 - -
Phco6g03047 471 Gene3D - 11 470 - -
Phco6g03047 471 NCBIfam V-type ATPase subunit B 2 469 IPR005723 GO:0033180|GO:0046961|GO:1902600
Phco6g03047 471 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 129 360 IPR000194 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g03047 Phco-Chr6 51529604 51535324 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g03047 6 51529604 51535324 Phco6g03047 6 51529604 51535324 ECH