Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g03042 ATGATTTTGACCAAAACAAGCTGTATAATACAGTGCTGGAGTTTGATTAGTAGAGCTACGATGGATTTTGACGAGTATGAGTATTTAGAGAAAACAGTTGAAAATGCTGAAGTTAAGAAGGAGAAGCATAGGATTAACGGTAGTGACAGAAGTGTGAAGTCCGAAGAGAGAGGGCATGGTCGGAGTTCTAAGCGTAAGAGTGATGAAAAAGATGACGACGACGTTGAATTCCATTTCAAGCATTCAAAATCTGGAGATGATTCCCGCCATTATGAGAGGAAGAGAGAAAGAGGCTCCTCTCGTCATGGTTTGCCGTCCAGAGATGGAGAGAAGGAGAAAGATCAGCACAGAAGCTCTGGGGGCAGTAGGGATAGGAAGAGGGATAGGGACAGAGACCATGAGAGCAATGATTTTAAGAGAGGTAGGGAGAGAGACAGAGATCGCGAGCGCGACCAAGAAAGGGATAGAAGGGACCGAGGAAGTGAGAGTGAACAGGAACACCGCAGTAGAAGTAGATCCGAAAAGCATCGGGGTGATCTGGATGACAGAGACAGAGAAACAGTTCTCGATAAAGACAGAGAAATAAGCCGGGATAAAGATTTCAGAGACAGAGAAAGGGTGAGGGAAACAAGGGAACGGGTTAGAGAAACCAGGCGACACAAAGAGAAAAAGGAAGAAGGAACAGAACCTGATGCTGATCCTGAAAGAGATCAAAGAACTGTGTTCGCCTATCAGATTTCTCTTAAAGCAGATGAAAGAGATGTATACGAGTTCTTCTCAAGGGCTGGCAAGGTACGAGATGTTCGCTTGATTATGGACCGCAATTCAAGGCGTTCTAAGGGTGTTGGGTATATTGAGTTTTATGATGTCATGTCTGTCCCCATGGCAATAGCACTTTCAGGCCAACCTCTCCTAGGTCAACCAGTGATGGTGAAGCCATCAGAAGCGGAAAAGAATTTGGTTCAGTCCACAACATCTGTTGCTAATGGATCCACTGGACTTATAGGTCCTTATTCTGGGGGAGCAAGAAGGCTCTATGTTGGAAATTTGCATATCAGTATGAGTGAAGCTGATATTCGTAAGGTGTTTGAAGCATTTGGTCAGGTTGAGCTAGTCCAGCTGCCGCTTGATGAAAGTGGGCACTGCAAAGGTTTTGGCTTTGTACAGTTTGCACGCCTTGAAGATGCAAGAAATGCTCAGAGCTTGAATGGTCAATTAGAGATTGGTGGTAGAACTATCAAGGTATCGGCTGTTACTGATCAATCTGGAATGCAAGAGATTGGAGGAAATACTGGTGATTTTGATGATGATGAAGGAGGTGGCTTGTCCTTGAATGCATGTTCTCGAGCAATACTCATGCAGAAGTTGGATCGTAGTGGCACTGCATCAAGCATGGTTGGTTCCCTGGGTAATTCTGTTGTCAGCAACACAGGTCTTAATCTACCAGCAACAGGAAACATACTCGCAGCTGTGCCCGAGGGTTCTCCCCTTTCTTCTATTCCTGCAGTATCTGGATTGGCAGGTGGAGGTCTCCAAATTCCCACGGCTACAATTCCTTCTATTGATACAATCGGTGTTCCAAGTGAATGCTTAATGTTAAAGAACATGTTTGATCCCAAAGACGAGACTGAACCAGATTTTGATTTGGATATTAAAGAAGATGTTGAAGCAGAATGCTCCAAGTTTGGGACGTTAAAACACATATATGTTGACAAGAAGAGTGCTGGTTTTGTCTACTTACGTTTTGAAGATACCAAATCTGCAATAAGTGCTCAGCGGTCCTTGCACGGAAGATGGTTTGCTGGGAAGATGATCACTGCGAGCTTCATGGTGCCTCAGTCATACGAGGATAAATTCCTAGACAGCAGATGA 1872 0.445 MILTKTSCIIQCWSLISRATMDFDEYEYLEKTVENAEVKKEKHRINGSDRSVKSEERGHGRSSKRKSDEKDDDDVEFHFKHSKSGDDSRHYERKRERGSSRHGLPSRDGEKEKDQHRSSGGSRDRKRDRDRDHESNDFKRGRERDRDRERDQERDRRDRGSESEQEHRSRSRSEKHRGDLDDRDRETVLDKDREISRDKDFRDRERVRETRERVRETRRHKEKKEEGTEPDADPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTSVANGSTGLIGPYSGGARRLYVGNLHISMSEADIRKVFEAFGQVELVQLPLDESGHCKGFGFVQFARLEDARNAQSLNGQLEIGGRTIKVSAVTDQSGMQEIGGNTGDFDDDEGGGLSLNACSRAILMQKLDRSGTASSMVGSLGNSVVSNTGLNLPATGNILAAVPEGSPLSSIPAVSGLAGGGLQIPTATIPSIDTIGVPSECLMLKNMFDPKDETEPDFDLDIKEDVEAECSKFGTLKHIYVDKKSAGFVYLRFEDTKSAISAQRSLHGRWFAGKMITASFMVPQSYEDKFLDSR 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g03042 623 MobiDBLite consensus disorder prediction 202 238 - -
Phco6g03042 623 SUPERFAMILY RNA-binding domain, RBD 341 434 IPR035979 GO:0003676
Phco6g03042 623 SMART rrm1_1 344 416 IPR000504 GO:0003723
Phco6g03042 623 SMART rrm1_1 240 312 IPR000504 GO:0003723
Phco6g03042 623 SMART rrm1_1 530 608 IPR000504 GO:0003723
Phco6g03042 623 CDD RRM3_RBM39_like 528 610 - -
Phco6g03042 623 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 21 621 IPR006509 GO:0003723|GO:0005634|GO:0006397
Phco6g03042 623 FunFam RNA-binding protein 39 isoform X1 232 324 - -
Phco6g03042 623 Gene3D - 337 444 IPR012677 -
Phco6g03042 623 SMART rrm2_1 530 608 IPR003954 GO:0003676
Phco6g03042 623 SMART rrm2_1 344 416 IPR003954 GO:0003676
Phco6g03042 623 Gene3D - 173 326 IPR012677 -
Phco6g03042 623 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 434 547 IPR029123 -
Phco6g03042 623 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 529 612 IPR000504 GO:0003723
Phco6g03042 623 SUPERFAMILY RNA-binding domain, RBD 525 609 IPR035979 GO:0003676
Phco6g03042 623 CDD RRM1_RBM39_like 240 312 - -
Phco6g03042 623 NCBIfam splicing factor, CC1-like family 122 621 IPR006509 GO:0003723|GO:0005634|GO:0006397
Phco6g03042 623 SUPERFAMILY RNA-binding domain, RBD 231 333 IPR035979 GO:0003676
Phco6g03042 623 FunFam CC1-like, splicing factor 338 446 - -
Phco6g03042 623 Coils Coil 204 224 - -
Phco6g03042 623 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 249 308 IPR000504 GO:0003723
Phco6g03042 623 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 345 414 IPR000504 GO:0003723
Phco6g03042 623 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 553 605 IPR000504 GO:0003723
Phco6g03042 623 MobiDBLite consensus disorder prediction 37 185 - -
Phco6g03042 623 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 343 420 IPR000504 GO:0003723
Phco6g03042 623 FunFam Splicing factor, CC1-like protein 524 623 - -
Phco6g03042 623 Coils Coil 26 46 - -
Phco6g03042 623 Gene3D - 524 623 IPR012677 -
Phco6g03042 623 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 239 316 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g03042 Phco-Chr6 51467878 51477491 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g03042 6 51467878 51477491 Phco6g03042 6 51467878 51477491 ECH