Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02821 ATGCAAACCTTCACTTTCCTCTACTTCACCTTCATTTCCCTCTCTCTCATCCTCTTCCACAACATCATCCTAGTCCAAGCCCTCACCTCACCCTTAGACATTGCAGCACTCAAAGCCTTCAAGGACTCAATCAAACCCTCCTCCATCGCATCCTCCTCTTGCCTCGCCTCATGGAACTTCACCACCGACCCATGCTCACTCCCTCGCCGCACCAACTTCATCTGCGGCCTCACCTGCACCACTGATTCCAGAAGAATCAGCCAAATCACTCTCGACCCAGCAGGCTACTCCGGCACACTCACCCCACTAATCTCTCGACTCTCACAACTCACCACACTAGACCTCTCCGATAACAACTTCTTCGGCTCAATCCCCTCTTCAATCTCCTCTCTCTACAACCTCCAAACCTTAACCCTCCGATCCAATTTCTTCTCAGGTCCAATCCCTCCCTCCATAACCGCCCTCAAATCACTCCAATCTCTTGACTTTTCACACAATTCTCTTGATGGGTATCTGCTAAACTCCATGAACTCCCTCACCAAACTCCGTAGACTCGATCTCAGCTTCAACAAACTAACCGGTTCAATCCCCAAACTCCCACCCAACTTGCTCGAACTCGCGATCAAGGCCAATTATCTATATGGGCCTCTCCAAAAACAGAGCTTTGAAGGGATGAACCAGTTAGAAGTGGTGGAGCTAAGCGATAACAAGCTCAGCGCGATGTTACCATCGTGGTTCTTCTCTTTACCGTCGCTGCAGCAAGTAAACTTGGCCAACAACACCTTCACGGCGGTGCAGATCTCGGGACCACGCGCGGATGGTGGGGGAATCGGCAGCCGCAGCAACCTCGTCGCGCTCGACCTTGGGTTTAACAGAATCCGAGGCTACGCGCCCGCGAATCTCGCCTCGTTTCCCGCGCTGTCGTTCCTGTCCATTCGCTACAACGGGCTACGTGGCTCGATCCCTCCGGAGTACGGCCACATCAAGTCCATAAGGAGGCTCTTCCTCGACGGAAACTTCCTCAACGGAAAGCCGCCGGCGGATCTTGTCGCCGCCGGCACGACGGTTTCCGGAAGTCTTGGGGACAATTGTCTGCAGGCGTGTCCCAGGTGGTCGCAGCTGTGCTCGCCCCCACAGAAAGCAATCTCCGTTTGCAAGCGAGCCTATAGTGGTAGACCAACACCGTAA 1188 0.5379 MQTFTFLYFTFISLSLILFHNIILVQALTSPLDIAALKAFKDSIKPSSIASSSCLASWNFTTDPCSLPRRTNFICGLTCTTDSRRISQITLDPAGYSGTLTPLISRLSQLTTLDLSDNNFFGSIPSSISSLYNLQTLTLRSNFFSGPIPPSITALKSLQSLDFSHNSLDGYLLNSMNSLTKLRRLDLSFNKLTGSIPKLPPNLLELAIKANYLYGPLQKQSFEGMNQLEVVELSDNKLSAMLPSWFFSLPSLQQVNLANNTFTAVQISGPRADGGGIGSRSNLVALDLGFNRIRGYAPANLASFPALSFLSIRYNGLRGSIPPEYGHIKSIRRLFLDGNFLNGKPPADLVAAGTTVSGSLGDNCLQACPRWSQLCSPPQKAISVCKRAYSGRPTP 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02821 395 Gene3D Ribonuclease Inhibitor 200 376 IPR032675 -
Phco6g02821 395 SMART LRR_typ_2 249 272 IPR003591 -
Phco6g02821 395 SMART LRR_typ_2 107 131 IPR003591 -
Phco6g02821 395 SMART LRR_typ_2 155 178 IPR003591 -
Phco6g02821 395 SMART LRR_typ_2 179 206 IPR003591 -
Phco6g02821 395 SMART LRR_typ_2 225 248 IPR003591 -
Phco6g02821 395 ProSiteProfiles Leucine-rich repeat profile. 181 203 IPR001611 GO:0005515
Phco6g02821 395 Pfam Leucine rich repeat N-terminal domain 33 66 IPR013210 -
Phco6g02821 395 FunFam Nuclear pore complex protein NUP107 31 198 - -
Phco6g02821 395 Gene3D Ribonuclease Inhibitor 32 199 IPR032675 -
Phco6g02821 395 PRINTS Leucine-rich repeat signature 158 171 - -
Phco6g02821 395 PRINTS Leucine-rich repeat signature 179 192 - -
Phco6g02821 395 Pfam Leucine rich repeat 201 260 IPR001611 GO:0005515
Phco6g02821 395 Pfam Leucine rich repeat 133 192 IPR001611 GO:0005515
Phco6g02821 395 Pfam Leucine Rich Repeat 109 131 IPR001611 GO:0005515
Phco6g02821 395 SUPERFAMILY L domain-like 65 386 - -
Phco6g02821 395 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 12 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02821 Phco-Chr6 49456463 49457650 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g02821 6 49456463 49457650 Phco6g02821 6 49456463 49457650 ECH