Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02780 ATGGCACAAAAGCTTTCTTTCTCTCCTATCCTCCCAAACCCAGCAGCACCCACACCCACACCCACACTGACACCCTCAACCACCGCATTCCCAAACCCACCTTCTCCCACACGCATAACCATAACCCCTCTTCTTCGAGATCTCTGTTTTAACCAAAAACCCTCTTCTCCGCCTCGTCTACACCTCACCACCTCCTCCCACCCTACACCCCGCCTCTCCCCTCAGGCTCACCGAATTCTCCAAACCCTAATCCACCCTTCCTTCGATTCCAATCGCTTCCACCAAATCATTTCTCTCCTATTCAACCAACCCGCTTCCTCCTCTCTCTCCTTCGACATTCTCGGCATAATCAAGGGTTTAGGGTTTAACAACAAGTTTGACCTCGCATTGTCCGTCTTCGACTTTATTCGAACCCGAAACGACCTCCTTTCGCTCTTGAACGGTTCCGTAATTGCCGTCATTGTCACCCTTCTTGGGAAAACGGGCAGGGTTTCCCGCGCAGCGTCGCTGCTGCACGATCTAGAAACCGACGGGGTTGAGGTTGATGTGTATGGCTACACCTCCCTCATAACTGCTTATGCAAATAATAGAAAATACAGAGATGCACTCAAGGTATTTGGCAAAATGAAAGAAGAGGGGTGTGAACCCACTTTGATTACTTACAATGCAATTTTGAATGTTTATGGGAAGATGGGCGTGCCTTGGACTACGATCATTGCTCTTGTTCAGGATATGAAGTCCCGTGGCCTTGCCCCTGATTTGTGTACTTATAATACACTTATAAGTTGTTGTAGGGCAGGTTCTTTGTATGAAGAGGCTCTTGATCTTTTTGAGGAGATTAAGGTGGCTGGATTTGCACCTGATGTGGTTACTTATAACGTGCTGTTGGATGTTTATGGTAAGTCCAGGCGGCCGAAGGAAGCCATGGAGGTTCTGAAACAGATGGAGATTAATGGTTTTCGGCCCAGCGTTGTCACTTACAACTCTTTGGTGTCGGCTAATGTTAGAGGTGGCTTGCTGGAGGATGCATTGGAGCTTAAAAGGGAAATGGTGGAGAAAGGGATTAAGCCTGATGTTTACACTTATACTACGCTTTTGTCAGGGTTTGTGAAGGCTGAGAAAGATGAGCTTGCAATGGAAGTTTTTGAAGAAATGAGAGAGGTGGGGTGCAAGCCTAATATATGCACCTTTAATGCGCTTATTAAGATGTATGGTGACAGAGGAAAGTTTGAGGAAATGGAGAGAGTTTTCAAGGAGATCAAGGTCTGTAGGTGTTCCCCTGATATTGTTACTTGGAATACACTTTTGGCAGTTTTTGGACAAAAGGGAATGGACTCTGAAGTGTCAGGAGTTTTTGAAGAAATGAAGAGAGCTGGGTTTGTGCTGGAGAGGGACACCTTCAACACTCTGATAAGTGCGTATGGCAGGTGTGGGTCATTTGACCAAGCTATGTCTGTTTATAAGACAATGCTGGAGGCTGGAGTGAGTCCTGATCTTTCTACTTACAATGCTGTTTTGGCAACATTGGCTCGAGGAGGGCTTTGGGAACAATCTGAGAAAGTCCTTGCTGAAATGAAAGATGGTGGATGTAAACCCAACGAGGCAACATATTCTTCTTTGCTCCATGCCTATGCCAATGGAAGAGAGGTTGAAAGGATGAATGCTCTAGCAGAGGAAATATACTCTGGAAGAATTAAAACGCATGCTGTTCTTTTGACCACACTTGTTCTAGTAAATAGCAAGGTTAATCTTGTAGTGCAAACTGAACGTGCATTTTTGGAGTTTAGGAAGAGAGGAATCTTGCCGGATATTACTACTATGAATGCAATGCTTTCCATATATGTGAGGAAGAATAAGAAGGGACCCAAAGCCAATGAGATTTTAAACTACATGTATGAGAGTGGATTGACTCTAAGTTTGACTGCTTATAATGGCTTGATGTATATGTTTAGCCGCACGGAAAATTTTCGAAAGTCAGAGCAAATCTTGAGGGAAATTCCGGATAAAGGTGTTGAACCAGATGTTATCTCATACAACGTAGTTATTTATGCATATTGCAGAAATCGCATGATGGAGGAGGCAAAAAGGATATTTGAAGAAATGAAAGATCCTGCTCCTGCTCCGGATGTTGTAACTTACAATACATTTATAGCAACTTACGCAGCTGACTCAATGTTTGTGGAGGCTATTGATGTAGTGCGGCATATGATCAAGCAAGGATGTAGGCCAGACCAGAATACTTACAACTCCATAGTTGATTGGTACTGTAAGCTCAAGTTGCGAGATGAGGCATGCCATTTTGTTCAAGACCTTGGCAACCTTGATCCACATATTGCTGAGGATGAAAAGAGCAGGTTACTTGAGCGCATAGCAAAGAAATGGTCGCAAGTTAAGCCATGA 2400 0.4429 MAQKLSFSPILPNPAAPTPTPTLTPSTTAFPNPPSPTRITITPLLRDLCFNQKPSSPPRLHLTTSSHPTPRLSPQAHRILQTLIHPSFDSNRFHQIISLLFNQPASSSLSFDILGIIKGLGFNNKFDLALSVFDFIRTRNDLLSLLNGSVIAVIVTLLGKTGRVSRAASLLHDLETDGVEVDVYGYTSLITAYANNRKYRDALKVFGKMKEEGCEPTLITYNAILNVYGKMGVPWTTIIALVQDMKSRGLAPDLCTYNTLISCCRAGSLYEEALDLFEEIKVAGFAPDVVTYNVLLDVYGKSRRPKEAMEVLKQMEINGFRPSVVTYNSLVSANVRGGLLEDALELKREMVEKGIKPDVYTYTTLLSGFVKAEKDELAMEVFEEMREVGCKPNICTFNALIKMYGDRGKFEEMERVFKEIKVCRCSPDIVTWNTLLAVFGQKGMDSEVSGVFEEMKRAGFVLERDTFNTLISAYGRCGSFDQAMSVYKTMLEAGVSPDLSTYNAVLATLARGGLWEQSEKVLAEMKDGGCKPNEATYSSLLHAYANGREVERMNALAEEIYSGRIKTHAVLLTTLVLVNSKVNLVVQTERAFLEFRKRGILPDITTMNAMLSIYVRKNKKGPKANEILNYMYESGLTLSLTAYNGLMYMFSRTENFRKSEQILREIPDKGVEPDVISYNVVIYAYCRNRMMEEAKRIFEEMKDPAPAPDVVTYNTFIATYAADSMFVEAIDVVRHMIKQGCRPDQNTYNSIVDWYCKLKLRDEACHFVQDLGNLDPHIAEDEKSRLLERIAKKWSQVKP 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02780 799 Pfam PPR repeat 466 495 IPR002885 -
Phco6g02780 799 Pfam PPR repeat 430 460 IPR002885 -
Phco6g02780 799 Gene3D Tetratricopeptide repeat domain 72 236 IPR011990 GO:0005515
Phco6g02780 799 FunFam Pentatricopeptide repeat-containing protein At1g74850, chloroplastic 233 335 - -
Phco6g02780 799 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 182 216 IPR002885 -
Phco6g02780 799 Pfam PPR repeat 669 702 IPR002885 -
Phco6g02780 799 Pfam PPR repeat 248 280 IPR002885 -
Phco6g02780 799 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 428 462 IPR002885 -
Phco6g02780 799 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 253 287 IPR002885 -
Phco6g02780 799 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 393 427 IPR002885 -
Phco6g02780 799 Pfam Pentatricopeptide repeat domain 169 231 IPR002885 -
Phco6g02780 799 Pfam Pentatricopeptide repeat domain 594 650 IPR002885 -
Phco6g02780 799 Pfam Pentatricopeptide repeat domain 346 407 IPR002885 -
Phco6g02780 799 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 639 673 IPR002885 -
Phco6g02780 799 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 674 708 IPR002885 -
Phco6g02780 799 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 323 357 IPR002885 -
Phco6g02780 799 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 463 497 IPR002885 -
Phco6g02780 799 PANTHER ATPASE EXPRESSION PROTEIN 3 295 665 - -
Phco6g02780 799 Gene3D Tetratricopeptide repeat domain 703 796 IPR011990 GO:0005515
Phco6g02780 799 Gene3D Tetratricopeptide repeat domain 581 702 IPR011990 GO:0005515
Phco6g02780 799 Gene3D Tetratricopeptide repeat domain 425 580 IPR011990 GO:0005515
Phco6g02780 799 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 358 392 IPR002885 -
Phco6g02780 799 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 603 638 IPR002885 -
Phco6g02780 799 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 288 322 IPR002885 -
Phco6g02780 799 NCBIfam pentatricopeptide repeat 325 359 IPR002885 -
Phco6g02780 799 NCBIfam pentatricopeptide repeat 676 702 IPR002885 -
Phco6g02780 799 NCBIfam pentatricopeptide repeat 255 289 IPR002885 -
Phco6g02780 799 NCBIfam pentatricopeptide repeat 501 534 IPR002885 -
Phco6g02780 799 NCBIfam pentatricopeptide repeat 711 744 IPR002885 -
Phco6g02780 799 NCBIfam pentatricopeptide repeat 219 253 IPR002885 -
Phco6g02780 799 NCBIfam pentatricopeptide repeat 186 217 IPR002885 -
Phco6g02780 799 NCBIfam pentatricopeptide repeat 360 394 IPR002885 -
Phco6g02780 799 NCBIfam pentatricopeptide repeat 466 498 IPR002885 -
Phco6g02780 799 NCBIfam pentatricopeptide repeat 642 675 IPR002885 -
Phco6g02780 799 NCBIfam pentatricopeptide repeat 430 461 IPR002885 -
Phco6g02780 799 NCBIfam pentatricopeptide repeat 290 323 IPR002885 -
Phco6g02780 799 NCBIfam pentatricopeptide repeat 395 429 IPR002885 -
Phco6g02780 799 Pfam PPR repeat family 497 546 IPR002885 -
Phco6g02780 799 Pfam PPR repeat family 287 333 IPR002885 -
Phco6g02780 799 Pfam PPR repeat family 708 757 IPR002885 -
Phco6g02780 799 MobiDBLite consensus disorder prediction 1 36 - -
Phco6g02780 799 Gene3D Tetratricopeptide repeat domain 352 424 IPR011990 GO:0005515
Phco6g02780 799 Gene3D Tetratricopeptide repeat domain 283 351 IPR011990 GO:0005515
Phco6g02780 799 Gene3D Tetratricopeptide repeat domain 237 282 IPR011990 GO:0005515
Phco6g02780 799 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 709 743 IPR002885 -
Phco6g02780 799 MobiDBLite consensus disorder prediction 12 36 - -
Phco6g02780 799 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 498 532 IPR002885 -
Phco6g02780 799 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 217 252 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02780 Phco-Chr6 49128214 49130613 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g02780 6 49128214 49130613 Phco6g02780 6 49128214 49130613 ECH