Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02757 ATGCAAAATGAAAAATGTGAATTTGGTTTAGACGCCTCGTGGCGAAAAAAGGAAGGGGAAGTTGTCGTCATGGCTTTGATCACATGTTTACCACCCGAACCCGAACCCGAACCCGAACCCGAACCCGTACCCGTTTACCACAAGAACTGGATAGCACCTTCTCGCACCTATCTACGTCGCCGTTGGAACCAAAACCACATTCCTAGTGTCATACCCTTCACCCGTTCACTCCAAATTTTGAAACTTTGTTTCCAATTGCGTGTACCCATGTCTTCTTCTCTCTCCCTATCACTCTCTGCTTCCTCCATCCACGGTTCTTCCTTCCACCATGGAACAAAGCTCTTTCCCCTTTCTCTAAGAGTTACACCACGCGGCTTCAATTCTTCCTCTGCCAAGTGCTCCCTCGACCATATCCCCAAACAGTTCAGAAAGGACAATCTCAAAGATGGATTGACGGAAAACTACAAGAACGTACCTCAATATCTATATGGCCTCACTCCTTCACAAATGGACATGTTCATGACAGAAGATAATCCTGTCCGCCGGCAATCTGAAATAGTTACAGAGGAAAGCATCTCATCTGCCAATAATTATATAAATAATGGTGGAATGTGGAGTCTATCTGGCATGGCAAGAAATGGTCCTTCAAAATACAGCATGAGTGTTAGTATGTATCAAGGAGGTAGGGGAGGTGACAGGCCAGAAACTGCTCCACCAGATCTGCCTTCTTTGCTTTTGGACGCTCGAATATGCTATCTGGGTATGCCGATTGTCCCAGCTGTGACAGAACTCATCGTTGCTCAACTCATGTGGTTGGATTATGATAACCCAACCAAACCTATTTACTTGTATATTAATTCATCTGGAACTCAGAATGAGAAGAATGAAACCGTGGGATCAGAAACCGATGCATACTCCATAGCTGATATGATGTCTTATGTCAAATCAGATGTGTATACTGTGAATTGTGGTATGGCATTTGGTCAATCAGCAATGCTTCTGTCGCTTGGAACAAAGGGTTATCGTGCTGTACAACCAAACTCATCTACAAAATTATATCTCCCAAAAGTCAATAGATCAAGTGGAGCTGTTATAGACATGTGGATTAAGGCAAAAGAGCTTGAGGCAAATTCTGAGTATTACGTTGACCTGTTGGCAAAAGGGACAGGGAAACCAAAGGAAGAAATCACTAAAGATGTCCAGAGGCCTAAGTATCTTCAAGCACAGCAAGCTATAGACTACGGACTTGCTGACAAAATAATTGATTCAAGTTCAACGGATATTGCATTTGAGAAGCGGAATTATGATGACATGCTTGCTCAATCAAGTGCTACGAGGAATCAAGGTGGTGGCAATCCTCAAGTGTCTCCTTCAGGATTCAGGTAA 1386 0.4351 MQNEKCEFGLDASWRKKEGEVVVMALITCLPPEPEPEPEPEPVPVYHKNWIAPSRTYLRRRWNQNHIPSVIPFTRSLQILKLCFQLRVPMSSSLSLSLSASSIHGSSFHHGTKLFPLSLRVTPRGFNSSSAKCSLDHIPKQFRKDNLKDGLTENYKNVPQYLYGLTPSQMDMFMTEDNPVRRQSEIVTEESISSANNYINNGGMWSLSGMARNGPSKYSMSVSMYQGGRGGDRPETAPPDLPSLLLDARICYLGMPIVPAVTELIVAQLMWLDYDNPTKPIYLYINSSGTQNEKNETVGSETDAYSIADMMSYVKSDVYTVNCGMAFGQSAMLLSLGTKGYRAVQPNSSTKLYLPKVNRSSGAVIDMWIKAKELEANSEYYVDLLAKGTGKPKEEITKDVQRPKYLQAQQAIDYGLADKIIDSSSTDIAFEKRNYDDMLAQSSATRNQGGGNPQVSPSGFR 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02757 461 FunFam ATP-dependent Clp protease proteolytic subunit 216 425 - -
Phco6g02757 461 CDD S14_ClpP_2 240 420 IPR001907 GO:0004176|GO:0004252|GO:0006508
Phco6g02757 461 Gene3D - 218 428 - -
Phco6g02757 461 Pfam Clp protease 242 423 IPR023562 -
Phco6g02757 461 PRINTS Clp protease catalytic subunit P signature 280 300 IPR001907 GO:0004176|GO:0004252|GO:0006508
Phco6g02757 461 PRINTS Clp protease catalytic subunit P signature 240 255 IPR001907 GO:0004176|GO:0004252|GO:0006508
Phco6g02757 461 PRINTS Clp protease catalytic subunit P signature 399 418 IPR001907 GO:0004176|GO:0004252|GO:0006508
Phco6g02757 461 PRINTS Clp protease catalytic subunit P signature 320 337 IPR001907 GO:0004176|GO:0004252|GO:0006508
Phco6g02757 461 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 130 424 IPR023562 -
Phco6g02757 461 MobiDBLite consensus disorder prediction 439 461 - -
Phco6g02757 461 SUPERFAMILY ClpP/crotonase 235 424 IPR029045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02757 Phco-Chr6 48975799 48985785 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g02757 6 48975799 48985785 Phco6g02757 6 48975799 48985785 ECH