Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02756 ATGGCATCTGCGGTGGCCGCCGCGACGGGGCAAGAGTTGTCGAATCCTCCATCGGACGGCATAACCAATCTCCGATTCTCAAATCACAGCGATAATCTCTTGGTCTCCTCATGGGACAAGACTGTGCGGCTGTATGATGCGAGCGCCAATGTCTTGAGAGGAGAGTTCATGCACGCTGGCCCCGTTCTCGATTGCTGCTTCCACGACGATTCCTCCGGCTTCAGTGTCGCCGCTGATAACACTGTTAGACGGCTCGTCTTCAGCTCTAATAAAGAGGATATCCTAGGAAGGCACGATGCGCCTGTTCGCTGTGTTGAGTACTCATATGCTGCAGGGCAATTGATCACTGGTAGTTGGGACAAAACCCTGAAATGTTGGGACCCCAGAGGTGCAAGTGGCCAAGAGCGAACACTCGTTGGAACATATCCACAGCCTGAGCGTGTTTACTCTCTCTCTCTGGTTGGAAATCGCCTGGTTGTAGCAACAGCTGGAAGACATGTTAACATCTATGATTTGAGGAACATGTCTCAACCTGAGCAGAAAAGAGAATCTTCGTTGAAATATCAAACCAGATGTGTGCGCTGTTACCCAAATGGAACAGGATATGCACTTAGTTCTGTTGAAGGGCGTGTTGCGATGGAATTCTTTGACCTCTCAGAAGCTATCCAGGCAAAAAAATATGCTTTCAAGTGTCACAGAAAATCCGAGGCCGGAAGGGACATTGTCTATCCTGTAAATGCAATTGCATACCACCCCGTATATGGAACGTTTGCCACAGGTGGTTGTGACGGGTATGTTAACGTGTGGGACGGAAACAATAAGAAGAGGCTATACCAGTACTCAAAGTATCCTACTAGCATTGCTGCGCTGTCGTTTAGCAGAGATGGACGCCTCTTGGCCGTTGCATCAAGTTACACATTCGAAGAAGGGCCCAAAACAGGACTTCCATTCTTCGAACCAGATGCAATCTACGTTCGCAGTGTAAACGAGATTGAGGTGAAGCCGAAGCCCAAAGTCTATCCCAATCCTCCAGCGCGTCAACTTAAACCCACGAGCATTGAAGGGCATACGATTCGGAGCTGA 1083 0.4922 MASAVAAATGQELSNPPSDGITNLRFSNHSDNLLVSSWDKTVRLYDASANVLRGEFMHAGPVLDCCFHDDSSGFSVAADNTVRRLVFSSNKEDILGRHDAPVRCVEYSYAAGQLITGSWDKTLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNIYDLRNMSQPEQKRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEAIQAKKYAFKCHRKSEAGRDIVYPVNAIAYHPVYGTFATGGCDGYVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGPKTGLPFFEPDAIYVRSVNEIEVKPKPKVYPNPPARQLKPTSIEGHTIRS 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02756 360 MobiDBLite consensus disorder prediction 1 21 - -
Phco6g02756 360 Gene3D - 6 339 IPR015943 GO:0005515
Phco6g02756 360 FunFam Mitotic checkpoint protein bub3, putative 6 338 - -
Phco6g02756 360 ProSiteProfiles Trp-Asp (WD) repeats profile. 95 127 IPR001680 GO:0005515
Phco6g02756 360 PRINTS G protein beta WD-40 repeat signature 33 47 IPR020472 -
Phco6g02756 360 PRINTS G protein beta WD-40 repeat signature 257 271 IPR020472 -
Phco6g02756 360 PRINTS G protein beta WD-40 repeat signature 114 128 IPR020472 -
Phco6g02756 360 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 95 127 - -
Phco6g02756 360 MobiDBLite consensus disorder prediction 339 360 - -
Phco6g02756 360 Pfam WD domain, G-beta repeat 95 127 IPR001680 GO:0005515
Phco6g02756 360 Pfam WD domain, G-beta repeat 19 46 IPR001680 GO:0005515
Phco6g02756 360 Pfam WD domain, G-beta repeat 229 270 IPR001680 GO:0005515
Phco6g02756 360 SUPERFAMILY WD40 repeat-like 16 304 IPR036322 GO:0005515
Phco6g02756 360 ProSiteProfiles Trp-Asp (WD) repeats profile. 245 279 IPR001680 GO:0005515
Phco6g02756 360 SMART WD40_4 49 86 IPR001680 GO:0005515
Phco6g02756 360 SMART WD40_4 9 46 IPR001680 GO:0005515
Phco6g02756 360 SMART WD40_4 228 270 IPR001680 GO:0005515
Phco6g02756 360 SMART WD40_4 88 127 IPR001680 GO:0005515
Phco6g02756 360 SMART WD40_4 135 171 IPR001680 GO:0005515
Phco6g02756 360 PANTHER MRNA EXPORT FACTOR AND BUB3 11 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02756 Phco-Chr6 48972102 48975775 Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g02756 6 48972102 48975775 Phco6g02756 6 48972102 48975775 ECH