Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02526 ATGAAGATACCCGGCCCGTTGTTTGGCAGAGTTAAGGTTTCAGGGTTTTCTTTTGCGCTTACTTTGCTTTCTCTATTCTGCAAGAGCCGTTATTGGCTTTGGACACGCAGACTTCACTCTTCATCAATGGCATCCTCTGCCAGCAACAAAGAGCAAGTGCAACCCACACCCGAGGACCCCGAGAAGAAAAAGAAAAAGGAAGAAAAGGCTAGAGAGAAGCAATTGAAGAAAGAGAAGTTTCTTCTTAAGCAAGCTCAGCAGCAAGCACAACAATCATCCAGTGCTTCTAAAAAAAGTGAAAAGAAAGTTGTAAAGCGTGGTGCGGAGGATGAGAATCCTGAAGATTATGTTGATCCTGAGACTCCAATGGGTGAGAAGAAGCAAATGGCTCGGCAAATGGCAAAGCAGTATAGTCCAACTGCCGTGGAGAAATCGTGGTACGAATGGTGGGAGAAATCAAGGTACTTTGTGGCAGATGCTAACAGCTCCAAACCTCCTTTTGTTATTGTTTTGCCCCCTCCGAATGTGACTGGTGCTCTCCATATAGGTCATGCTCTAACAGCCGCAATAGAGGACACAATGATCCGATGGAAGAGGATGTCTGGATACAATGCCTTGTGGGTACCTGGGATGGATCATGCTGGGATTGCTACGCAGGTAGTTGTGGAGAAAAAGGTAATGCGGGAAAGAAAACTAACCAGGCATGATCTGGGTCGTGAGAAATTTGTCGCTGAGGTTTGGGAGTGGAAACACAAGTATGGGGGGACAATATTACAACAATTGCGCCGATTAGGAGCCTCTTTGGATTGGTCTCGTGAGTGCTTTACAATGGATGAAAGAAGAAGTAAGGCTGTGACAGAGGCTTTTGTAAGGCTTTACAAGCAAGACCTTATCTATAGGGACCTTCGTTTAGTGAATTGGGATTGTGTGTTACGAACTGCAATATCTGATATTGAGGTGGATTATATTGATATAAAAGAAAGGAGTCTACTAAAGGTTCCAGGATATGATAAACCAGTGGAATTTGGAGTTTTAACAAAGTTTGCATACCCTGTGGAAGGGAACCTAGGTGAAATTGTTGTTGCCACAACCAGAATTGAAACAATGCTCGGTGACACTGCTATTGCAGTACATCCTAATGATGACAGATATAGCCATTTTCATGGAAAATATGCTATTCATCCATTTAATGGAAGAAAACTTCCTATAATCTGTGATGATATTCTTGTTGATCCAAAGTTCGGGACTGGTGCTGTTAAGATTACACCTGCCCATGATCCAAATGATTTTGAGGTGGGTAAACGTCACAATCTTGAATTCATTAATGTTTTCACAGATGATGGGAAAATAAATTCCAGTGGTGGCTCTGATTTTGTGGGCATGCCACGGTTTAAAGCTCGAGAGGCAGTAACAGAAGCATTACAGAAGAAGGGTCTTTATAGAGGATCTGAAAACAATGAGATGCGCCTTGGGGTTTGTTCAAGAAGCAATGATGTTGTGGAGCCCATGATAAAGCCCCAGTGGTATGTCAGTTGCAATGATTTGGCTAAGCAATCTCTTAATGCTGCTGTTGACGAGGAAAACAAAAGGCTAGAGATTGTTCCAAAACAATATTTGGCTGATTGGAAGAGATGGCTAGAAAACATTTGTGATTGGTGCATTTCACGACAGCTATGGTGGGGTCACCGAATACCTGCATGGTATGTCACTTTGGAGGATGACGTGCTGCAGGAATTTGGTGCTTATAACGATCATTGGGTTGTGGCAAGAAATGAAGAGGAGGCCCAAAAGGTTGCTCGCCAGAAGTATGGTGAAAAGAAGTTTAGTTTAGGCCAGGATCCTGATGTTCTTGATACATGGTTTTCTTCTGGTCTGTTCCCATTATCTGTGCTGGGATGGCCTGATGAGACAGAGGACCTGAAGACATTCTATCCAACTTCTGTTCTGGAAACTGGCCATGATATCATCTTTTTTTGGGTTGCTCGTATGGTGATGTTTGGATTGAAGTTGGGTGGTGATGTGCCTTTCTCAACGATTTATTTGCATCCTATGATTCGTGATGCACATGGGCGCAAGATGTCCAAGTCCCTGGGGAATGTTATTGATCCCATTGAAGTGATAAGTGGGATATCTCTGGAAGGTCTACACAAGAGGTTAGAGGCTGGTAACCTGGATCCCAAAGAACTTGCTACTGCTATAGAGGGTCAGAAGAAGGACTTTCCAAATGGTATTGATGAATGTGGAGCCGATGCTCTCCGTTTTGCACTGGTCTCATACACAGCTCAGTCTGACAAAATTAACCTAGATATTCAAAGGGTGGTTGGGTATCGCCAATGGTGTAATAAACTGTGGAATGCAGTAAGATTTGCTATGAGCAAGCTTGGGGATGATTATATTCCACCAGCAGAATTGAATCTAGATGCTCTCCCATTTAGCTGCCAGTGGATACTCTCAGTGTTGAATAAAACCATATCAAAAACAGTGAAGTCTCTAGAATCATTTGAATTCTCGCAAGCTACCACTGCTGTATATTCTTGGTGGCAGTATCAATTGTGTGATGTATTTATCGAAGTGATTAAGCCTTACTTTACTGGTAATGATCCTAAGTTTGCTTCTGAAAGACGCTTTGCACAAGATACTTTGTGGTTTTGTCTGGACAATGGCCTTCGATTGCTTCATCCCTTCATGCCTTTTGTCACGGAAGAATTATGGCAACGCCTTCCTTCACCCAGGGAATGTAAGAGAGCAGAATCTATCATGATATGCGATTATCCATCAACTGTAGAGGGCTGGAATAATGAAACGGTGGAGAATGAAATGGACATTATTGAGTCTACTATTAAGTCTCTGAGGTCACTGGCTAAAGAAAAACGTGACAGGCGACCGGCTTTTGTTCTCTGCCGAACACAGGCGGTTACTGTGATTATTAAGAGCCACCAACTGGAGATTGTAACATTAGCTAATATATCGTCTTTGACAGTAATCTCTGAAACTGATGCTGTCCCATCTGGATATGCTGATGCCGTCGTAAATGAAAGCATTTCTGTTTATCTAGAGTTACAAGGAACCAATTCTGCAGAGGCTGAGCAAGGGAAGATCAAGAAGATAGATGAGCTGAGAAAGCAAATAGAAAGACTAGAGAAGATTATGAATGCTCCAGGTTATGAAGAGAAGGTTTTACCAAATGTTCGAGCAAAGAACCAGGAGAAGCTAGATTCCCTAAAGGAGCGTTTATTGCTTGAGGAAACGGCTGGTCTGAATCTCTAG 3267 0.4279 MKIPGPLFGRVKVSGFSFALTLLSLFCKSRYWLWTRRLHSSSMASSASNKEQVQPTPEDPEKKKKKEEKAREKQLKKEKFLLKQAQQQAQQSSSASKKSEKKVVKRGAEDENPEDYVDPETPMGEKKQMARQMAKQYSPTAVEKSWYEWWEKSRYFVADANSSKPPFVIVLPPPNVTGALHIGHALTAAIEDTMIRWKRMSGYNALWVPGMDHAGIATQVVVEKKVMRERKLTRHDLGREKFVAEVWEWKHKYGGTILQQLRRLGASLDWSRECFTMDERRSKAVTEAFVRLYKQDLIYRDLRLVNWDCVLRTAISDIEVDYIDIKERSLLKVPGYDKPVEFGVLTKFAYPVEGNLGEIVVATTRIETMLGDTAIAVHPNDDRYSHFHGKYAIHPFNGRKLPIICDDILVDPKFGTGAVKITPAHDPNDFEVGKRHNLEFINVFTDDGKINSSGGSDFVGMPRFKAREAVTEALQKKGLYRGSENNEMRLGVCSRSNDVVEPMIKPQWYVSCNDLAKQSLNAAVDEENKRLEIVPKQYLADWKRWLENICDWCISRQLWWGHRIPAWYVTLEDDVLQEFGAYNDHWVVARNEEEAQKVARQKYGEKKFSLGQDPDVLDTWFSSGLFPLSVLGWPDETEDLKTFYPTSVLETGHDIIFFWVARMVMFGLKLGGDVPFSTIYLHPMIRDAHGRKMSKSLGNVIDPIEVISGISLEGLHKRLEAGNLDPKELATAIEGQKKDFPNGIDECGADALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFAMSKLGDDYIPPAELNLDALPFSCQWILSVLNKTISKTVKSLESFEFSQATTAVYSWWQYQLCDVFIEVIKPYFTGNDPKFASERRFAQDTLWFCLDNGLRLLHPFMPFVTEELWQRLPSPRECKRAESIMICDYPSTVEGWNNETVENEMDIIESTIKSLRSLAKEKRDRRPAFVLCRTQAVTVIIKSHQLEIVTLANISSLTVISETDAVPSGYADAVVNESISVYLELQGTNSAEAEQGKIKKIDELRKQIERLEKIMNAPGYEEKVLPNVRAKNQEKLDSLKERLLLEETAGLNL 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02526 1088 NCBIfam valine--tRNA ligase 133 1071 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Phco6g02526 1088 SUPERFAMILY Nucleotidylyl transferase 132 778 - -
Phco6g02526 1088 PANTHER VALYL-TRNA SYNTHETASES 110 1082 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Phco6g02526 1088 FunFam Valine--tRNA ligase, mitochondrial 341 482 - -
Phco6g02526 1088 FunFam Valine--tRNA ligase, mitochondrial 723 958 - -
Phco6g02526 1088 Pfam tRNA synthetases class I (I, L, M and V) 146 769 IPR002300 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Phco6g02526 1088 CDD Anticodon_Ia_Val 768 907 IPR033705 -
Phco6g02526 1088 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 780 1035 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Phco6g02526 1088 Coils Coil 82 102 - -
Phco6g02526 1088 Gene3D HUPs 134 332 IPR014729 -
Phco6g02526 1088 FunFam Valine--tRNA ligase, mitochondrial 135 333 - -
Phco6g02526 1088 FunFam Valine--tRNA ligase, mitochondrial 460 693 - -
Phco6g02526 1088 Hamap Valine--tRNA ligase [valS]. 133 1087 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Phco6g02526 1088 Gene3D HUPs 517 767 IPR014729 -
Phco6g02526 1088 MobiDBLite consensus disorder prediction 81 97 - -
Phco6g02526 1088 Gene3D - 774 958 - -
Phco6g02526 1088 CDD ValRS_core 165 768 - -
Phco6g02526 1088 Pfam Anticodon-binding domain of tRNA ligase 814 957 IPR013155 GO:0004812|GO:0006418
Phco6g02526 1088 PRINTS Valyl-tRNA synthetase signature 378 395 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Phco6g02526 1088 PRINTS Valyl-tRNA synthetase signature 613 634 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Phco6g02526 1088 PRINTS Valyl-tRNA synthetase signature 167 178 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Phco6g02526 1088 PRINTS Valyl-tRNA synthetase signature 644 662 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Phco6g02526 1088 PRINTS Valyl-tRNA synthetase signature 495 508 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Phco6g02526 1088 MobiDBLite consensus disorder prediction 55 80 - -
Phco6g02526 1088 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 174 185 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Phco6g02526 1088 Gene3D - 341 486 IPR009008 GO:0002161|GO:0006418
Phco6g02526 1088 MobiDBLite consensus disorder prediction 98 112 - -
Phco6g02526 1088 MobiDBLite consensus disorder prediction 43 124 - -
Phco6g02526 1088 SUPERFAMILY ValRS/IleRS/LeuRS editing domain 340 490 IPR009008 GO:0002161|GO:0006418
Phco6g02526 1088 Coils Coil 1029 1049 - -
Phco6g02526 1088 Coils Coil 933 953 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02526 Phco-Chr6 46759977 46775210 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g02526 6 46759977 46775210 Phco6g02526 6 46759977 46775210 ECH