Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02517 ATGGCTGACGAAGACTATGATGATATGGACATGGGAGTTAGAGTTTATTTAGTAACCTGTGTATTTTTATTGAATGACTTCTCATGGAGTAATGTGTGCTCATACAGGTACGAGGATGAGCCACCAGAGCCTGAGATTGAGGAAGGTGCGGAGGAGGATTTGGAAAACAAAAATGACGAATTAACTGGAGATCCTATTGACACTGAGGATAAGGAAGAGGAACAACAAGGGGAACGCCCTCGAAAGACCTCGATATATATGACTAAGTATGAGCGTGCTAGGATTTTGGGCACCCGAGCTCTTCAAATCAGTATGAATGCTCCTGTCATGGTCGAATTGGAGGGGGAAACTGATCCACTTGAGATTGCTATGAAGGAACTCCGAGAGCGAAAAATTCCCTTTACAATCCGGCGTTACTTGCCTGATGGAAGCTACGAGGATTGGGGAGTTGATGAACTGATTGTGGAAGACTCCTGGAAGAGGCAAGTGGGTGGTGATTAA 501 0.4491 MADEDYDDMDMGVRVYLVTCVFLLNDFSWSNVCSYRYEDEPPEPEIEEGAEEDLENKNDELTGDPIDTEDKEEEQQGERPRKTSIYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGD 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02517 166 PIRSF RPB6 25 157 IPR028363 GO:0003899|GO:0005634|GO:0005665|GO:0006351
Phco6g02517 166 FunFam DNA-directed RNA polymerases I, II, and III subunit RPABC2 26 157 - -
Phco6g02517 166 PIRSF RpoK/RPB6 28 157 IPR006111 GO:0003677|GO:0003899|GO:0006351
Phco6g02517 166 ProSitePatterns RNA polymerases K / 14 to 18 Kd subunits signature. 88 102 IPR020708 GO:0003677|GO:0003899|GO:0006351
Phco6g02517 166 Gene3D - 33 157 IPR036161 GO:0003677|GO:0003899|GO:0006351
Phco6g02517 166 Hamap DNA-directed RNA polymerase subunit Rpo6 [rpo6]. 85 140 IPR006111 GO:0003677|GO:0003899|GO:0006351
Phco6g02517 166 Pfam RNA polymerase Rpb6 83 134 IPR006110 GO:0003677|GO:0003899|GO:0006351
Phco6g02517 166 SUPERFAMILY RPB6/omega subunit-like 38 156 IPR036161 GO:0003677|GO:0003899|GO:0006351
Phco6g02517 166 SMART RNA_pol_Rpb6_2 81 134 IPR006110 GO:0003677|GO:0003899|GO:0006351
Phco6g02517 166 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT K 36 156 - -
Phco6g02517 166 MobiDBLite consensus disorder prediction 41 58 - -
Phco6g02517 166 MobiDBLite consensus disorder prediction 39 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02517 Phco-Chr6 46612831 46614751 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g02517 6 46612831 46614751 Phco6g02517 6 46612831 46614751 ECH