Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02494 ATGGGAAAGCAAAAGCAACAAGTGATTTCCCGCTTCTTTGCTCCCAAAGACAAATCTCCTTCTCCTTCTTCTCCCCGTCCCAACCCTCCCACTCCCAAAATCTCTGCCACGGCCACATTCTCCCCTTCCAAACGCCGCCTAACGTCCCAACTCACACCCCCTCGCAAGCTCCAGAAGCTTCTCGAACCTTCTTCCTCTTCACTGCACCAACGCTTCCTCCACAAGTTTCTCGAACCTTCCTCCCCTCAACACCCTCCTCTCCCTTCCTCTTCCAAACGCCTAACCTACACTCCCCTCGAACAGCAGGTTCTCCACCTCAGAGCCAAACACCCCGACGTTCTCCTCATGGTCGAGGTCGGTTACAGGTACCGTTTCTTTGCCCAAGACGCCGAACACGCCGCCAGAGTCTTAGGCATTTACGCGCACATGGATCACAATTTCTTAACCGCAAGCATACCGACGTTTCGACTGAATATCCACGTCAGGAGGCTCGTCAGTGCTGGGTATAAGGTCGGCGTTGTTCGGCAGACCGAGACCGCCGCCATCAAGGCTCACGGCTCCAACCGCTCGGCGCCGTTTGGGCGCGGGCTGTCGGCGCTTTACACGAAGGCCACGCTCGAGGCGGCCCCGGAGATTGGGGGAGGGGGGGACGGGTGTGGTGGAGAGAGTAATTACTTGCTGTGTGTGGTGGAGAAGAGTGTTGTGGGGGAGAAGGGGAATTGTGGTGTGGAGGGTGGTGTTGATGTGAGGGTTGGGATTGTTGCTGTGGAGATTTCGACCGGGGATGTTGTTTATGGGGAGTTTTGTGATGGTTTTCTGCGGAGTGCGCTTGAGGCTGTTATTGTGAACTTGTCTCCGGCTGAGTTGCTTCTTGGGGACCCTCTTTCAAAGCAAACGGAGAAGTTATTGCTGGATTTTGCTGGACCTGCCTCAAATGTTCGTGTGGAGCATCTTTCACGAGACTGCTTCACTGATGGGGGTGCTCTTTCTGAAGTTATGACCTTGTATGAGAACGTGGATGTAGACAGTCTATCAGATTCAATACAAAGCAAGAATTCGACTGAGCACAGAAGTCAGCAGTTAGTAATCAAGGAGGTTATGAACATGCCAGATTTGTCTGTCCAAGCTTTGGCCTTAACTATTCGTCATTTAAAGGAATATGGTTTTGAAAGAATTTTGTGTTCAGGAGCTTCTTTAAGGCCCTTCTCAAACAATATGGAAATGACCCTTTCAGCCAATACACTTCAACAACTGGAGGTTTTGAAAAATAATAATGATGGATCTGAGATTGGTTCCTTGCTGCAAATTATGAATCATACTCTCACTATATTTGGTTCCAGACTTCTTAGGCATTGGGTATCTCACCCATTGTGTGATCGTACCTTAATTTCTGCTCGCCTTCATGCTGTATCTGAAATTGCGGAGTCCATGGGATCTTGTAATGGCACGAACAATTTTGGACATGTTGAAGATCCTGATGTAGCAATCGTGCAACCTGAGTTAGCATACGTTCTTTCATTGGTTTTGACAAATCTTGGCCGAGCACCTGATATACAACGTGGAATTACAAGAATTTTCCATTGCACTGCTTCCCCATCTGAGTTTGTTGCAGTAATTCAAGCTATTTTATCTGCTGGAAAACAGCTACAACAACTTAACATAGGAGAGGGAAATAATAACAAATTGCGCTCCAATCTATTAAAAAAGTTAGTTTTGACTGCTTCCTCTGACAGTACTATTGCCAATGCTGCAAAAATGTTGTCATCTTTAAACATAGACTCTGCTGATCAAGGAGATCTAACAAAATTGATCACTGCTTCGGAGGGACAATTCCCAGAGGTCATTAGAGCTCGTAAGGATTTCAAGCTGGCAGTGGAACAATTAGATTCACTGATTGACTTGTATCGCAAATTGCTTATAATGCAAAATTTGGAATTTATTAGTATTTCTGGAACAACTCATTTGATTGAGTTATCAACAGATGTAAAGGTTCCTTCAAACTGGATCAAGGTAAATAGCACGAAGAAAACAATTCGGTATCACCCTCCTGAAGTAGTTACAGCATTGGACAGGTTGTCATTAGCAAAAGAGGAGCTCAGTGTTGCCTGCCGAGCTGCCTGGAATAGCTTTCTTAGGGGCTTCAGTAAACACTATGCTGAGTTCCAAGCTGTTGTTCAAGCACTAGCTGCTTTAGATTGTTTGCATTCACTTGCCATTCTTTCAAGAAATAAGGGTTATGTTTGCCCAGTGTTACTAGATGATCAAGAGCCTGTTCAGATACAAATTTGTTCTGGTAGACATCCGGTTTTGGAGACCATCTTACAAGACAATTTTGTCCCAAATGATACAAACTTGCATGCAGATGGAGAATACTGTCAGATTGTTACTGGACCCAATATGGGTGGAAAAAGTTGCTATGTTCGCCAGGTGGCTCTGATTGCTATAATGGCTCAGGTTGGTTCCTTTGTACCAGCATCATCAGCAAAACTGCACGTCCTGGACAGGATCTGCACCCGAATGGGTGCTTCTGACAGTATTCAAGAAGGGAGAAGCACCTTCCTAGAAGAACTAAGTGAGACTTCACATATACTCCAGTGTTGCACAGAACATTCACTGGTTATCATTGATGAGCTTGGGAGAGGAACAAGTACACATGATGGTATGGCCATTGCTCACGCGACGTTGCATTATCTTCTGAAGCAAAAAAGAAGCATGGTCCTCTTTGTTACTCACTATCCAAAGATTGCCAACCTGGCAACTGAATTTCCTGGCTCTGTGGCAGCATATCACGTGTCACATCTGATCCCCCATGATGCGAGGAAAAATTCGAACTTGGATCATGATGTCACTTATCTGTACAAGCTCACACCTGGTGTTTCAGAGAGGAGTTTTGGATTTAAGGTTGCCCAGCTTGCACAGTTGCCATCGCATTGCATCAGTCGAGCGCTAGTAATGGCTTCCAAATTAGAAGCACTAGTAAATAGTAGAATACATAGTAGATCGGGAAAGGAGCAAGAACAGCGTATGGCTCAACCACATGATCGTCCACTTCAAGAGTTTGGTATAGCTTACAAAGATTTCTATCTAAACTTAAAAGCTGCAATACAAGATGATGATTGTGCAAAAAGCTTTCATCTGTTGAAACATGCTAGAAGCATTGCAAAGAAATTAATTGGCAGTTGA 3183 0.4524 MGKQKQQVISRFFAPKDKSPSPSSPRPNPPTPKISATATFSPSKRRLTSQLTPPRKLQKLLEPSSSSLHQRFLHKFLEPSSPQHPPLPSSSKRLTYTPLEQQVLHLRAKHPDVLLMVEVGYRYRFFAQDAEHAARVLGIYAHMDHNFLTASIPTFRLNIHVRRLVSAGYKVGVVRQTETAAIKAHGSNRSAPFGRGLSALYTKATLEAAPEIGGGGDGCGGESNYLLCVVEKSVVGEKGNCGVEGGVDVRVGIVAVEISTGDVVYGEFCDGFLRSALEAVIVNLSPAELLLGDPLSKQTEKLLLDFAGPASNVRVEHLSRDCFTDGGALSEVMTLYENVDVDSLSDSIQSKNSTEHRSQQLVIKEVMNMPDLSVQALALTIRHLKEYGFERILCSGASLRPFSNNMEMTLSANTLQQLEVLKNNNDGSEIGSLLQIMNHTLTIFGSRLLRHWVSHPLCDRTLISARLHAVSEIAESMGSCNGTNNFGHVEDPDVAIVQPELAYVLSLVLTNLGRAPDIQRGITRIFHCTASPSEFVAVIQAILSAGKQLQQLNIGEGNNNKLRSNLLKKLVLTASSDSTIANAAKMLSSLNIDSADQGDLTKLITASEGQFPEVIRARKDFKLAVEQLDSLIDLYRKLLIMQNLEFISISGTTHLIELSTDVKVPSNWIKVNSTKKTIRYHPPEVVTALDRLSLAKEELSVACRAAWNSFLRGFSKHYAEFQAVVQALAALDCLHSLAILSRNKGYVCPVLLDDQEPVQIQICSGRHPVLETILQDNFVPNDTNLHADGEYCQIVTGPNMGGKSCYVRQVALIAIMAQVGSFVPASSAKLHVLDRICTRMGASDSIQEGRSTFLEELSETSHILQCCTEHSLVIIDELGRGTSTHDGMAIAHATLHYLLKQKRSMVLFVTHYPKIANLATEFPGSVAAYHVSHLIPHDARKNSNLDHDVTYLYKLTPGVSERSFGFKVAQLAQLPSHCISRALVMASKLEALVNSRIHSRSGKEQEQRMAQPHDRPLQEFGIAYKDFYLNLKAAIQDDDCAKSFHLLKHARSIAKKLIGS 1060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02494 1060 ProSitePatterns DNA mismatch repair proteins mutS family signature. 871 887 IPR000432 GO:0005524|GO:0006298|GO:0030983
Phco6g02494 1060 SUPERFAMILY DNA repair protein MutS, domain III 412 743 IPR036187 -
Phco6g02494 1060 Gene3D DNA repair protein MutS, domain I 88 211 IPR016151 GO:0005524|GO:0006298|GO:0030983
Phco6g02494 1060 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 101 1006 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Phco6g02494 1060 FunFam DNA mismatch repair protein 87 215 - -
Phco6g02494 1060 FunFam DNA mismatch repair protein 220 405 - -
Phco6g02494 1060 Gene3D - 410 738 - -
Phco6g02494 1060 MobiDBLite consensus disorder prediction 1 53 - -
Phco6g02494 1060 Pfam MutS domain V 793 990 IPR000432 GO:0005524|GO:0006298|GO:0030983
Phco6g02494 1060 Gene3D MutS, connector domain 220 407 IPR036678 GO:0005524|GO:0006298|GO:0030983
Phco6g02494 1060 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 746 990 IPR027417 -
Phco6g02494 1060 SMART DNAend 428 773 IPR007696 GO:0005524|GO:0006298|GO:0030983
Phco6g02494 1060 FunFam DNA mismatch repair protein Msh3 588 714 - -
Phco6g02494 1060 Pfam MutS domain III 413 738 IPR007696 GO:0005524|GO:0006298|GO:0030983
Phco6g02494 1060 SUPERFAMILY DNA repair protein MutS, domain II 222 342 IPR036678 GO:0005524|GO:0006298|GO:0030983
Phco6g02494 1060 MobiDBLite consensus disorder prediction 33 53 - -
Phco6g02494 1060 Pfam MutS domain I 97 207 IPR007695 GO:0005524|GO:0006298|GO:0030983
Phco6g02494 1060 PIRSF Msh6 87 1020 IPR017261 GO:0006298|GO:0030983
Phco6g02494 1060 SMART mutATP5 790 987 IPR000432 GO:0005524|GO:0006298|GO:0030983
Phco6g02494 1060 Gene3D - 588 714 - -
Phco6g02494 1060 Pfam MutS domain II 224 320 IPR007860 GO:0005524|GO:0006298|GO:0030983
Phco6g02494 1060 Gene3D - 746 1025 IPR027417 -
Phco6g02494 1060 SUPERFAMILY DNA repair protein MutS, domain I 91 205 IPR016151 GO:0005524|GO:0006298|GO:0030983
Phco6g02494 1060 FunFam DNA mismatch repair protein MSH3 746 1016 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02494 Phco-Chr6 46350310 46358262 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g02494 6 46350310 46358262 Phco6g02494 6 46350310 46358262 ECH