Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02486 ATGAATTCAATAACCCTTTTTGGTCCAAAGATGGTCCACAAATTTTCCCATTCTTTGATTATTTTGCGGAGATTATGTAGCCATCCGTTTGATGGTGATGGATTTGAATGCATTGATGAGCCTTTGAAAAAACTAGGATTAAATCCTGATTCTACTGTGGATGTAACGCTCCGTTTAAACGAGGATTGGGGTTATAACCAAAAGCAGTTTTCACTTAGAAAAGGGTTCTTAGAAAATGTGAAGTTAGATGCTAAGAGGGTCCTTGAGGTTCTCCGGCAAGACGGTCCCGGTCTTGATGCGAGGTTGGTTTTGGGTGAGTTGCATGTAAAGCCATCAGGGCTTCTTGTGAGGGAGGTTCTCTTTAGAATTTTGAAGAACATAAATTCTGAGAATAAAACTAGGTGTGCAAAGCTGGCATACAAGTTTTTTGTGTGGTGTAGTCAGCAAGAGGGTTACCGGCACACTGCGAATGCATATCACTTAGTTATGAATATATATGCGGAGTGTGAGGAGTTTAAGGCATTGTGGAGATTGGTTGATGAAATGATTGAGAAAGGGCTTCCTGCTACGGCTCGAACTTTCAATATCTTGATTCGTACTTGTGGTGAGGCAGGATTGGCTAAGAAATTGGTGGAGAGGTTCATAAAATCGAAGACGTTTAACTTTAGGCCTTTTAAGCACTCCTACAATGCAATCCTACATGGTCTTCTTGTTTTAAAGCAGTACAAGTTGATTGAGTGGGTTTATCAGCAGATGTTGCTGGATGGATTTTCTTCAGATATTTTAACTTACAATATTGTCATGTATGCCAAGTACAGACTTGGAAAGTTGGATCAATTCCAAAGACTGTTTGATGAGATGGGTAGAAATGGATTTTCTCCAGATTTTCATACCTTCAATATTCTTCTTCATGTTCTTGGCAAAGGGGACAAACCGCTTGCGGCTCTCAATCTCTTAAATCACATGAGAGAAATGGGTATAGATCCAACTGTGCTTCATTTCACTACATTGATAGATGGACTCAGCAGAGCTGGAAATCTGGATGCTTGCAAGTATTTTTTTGATGAAATGATAAAGAATGGATGTATCCCAGATGTGGTGGCTTACTCTGTAATGATAACAGGATATGTAGTGGCTGGTGAGCTTGAGAGAGCCCTGGAAATGTATCAAGATATGATTTCTAGAGAACAAGTTCCAAATGTTTTTACATACAATTCCATAATTCGGGGATTATGCATGGCAGGAAAATTTGATGAAGCATGTTCAATGCTCAAAGAAATGGAAACCAAAGGTTGTAGTCCAAACTCGGTTGTCTATGATTCTTTAGTGAGTAGTTTACGGAATGCTGGAAAGACTGCTGATGCTCATGAAGTGATAAGACAGATGACAGAGAAGAGGAAGTATACCCACATATATTCAAGATACGAAGGGTACAAATGA 1440 0.3944 MNSITLFGPKMVHKFSHSLIILRRLCSHPFDGDGFECIDEPLKKLGLNPDSTVDVTLRLNEDWGYNQKQFSLRKGFLENVKLDAKRVLEVLRQDGPGLDARLVLGELHVKPSGLLVREVLFRILKNINSENKTRCAKLAYKFFVWCSQQEGYRHTANAYHLVMNIYAECEEFKALWRLVDEMIEKGLPATARTFNILIRTCGEAGLAKKLVERFIKSKTFNFRPFKHSYNAILHGLLVLKQYKLIEWVYQQMLLDGFSSDILTYNIVMYAKYRLGKLDQFQRLFDEMGRNGFSPDFHTFNILLHVLGKGDKPLAALNLLNHMREMGIDPTVLHFTTLIDGLSRAGNLDACKYFFDEMIKNGCIPDVVAYSVMITGYVVAGELERALEMYQDMISREQVPNVFTYNSIIRGLCMAGKFDEACSMLKEMETKGCSPNSVVYDSLVSSLRNAGKTADAHEVIRQMTEKRKYTHIYSRYEGYK 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02486 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 400 434 IPR002885 -
Phco6g02486 479 Pfam PPR repeat 228 257 IPR002885 -
Phco6g02486 479 Gene3D Tetratricopeptide repeat domain 110 240 IPR011990 GO:0005515
Phco6g02486 479 Pfam PPR repeat family 364 412 IPR002885 -
Phco6g02486 479 Pfam PPR repeat family 260 306 IPR002885 -
Phco6g02486 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 330 364 IPR002885 -
Phco6g02486 479 Gene3D Tetratricopeptide repeat domain 324 394 IPR011990 GO:0005515
Phco6g02486 479 Gene3D Tetratricopeptide repeat domain 395 467 IPR011990 GO:0005515
Phco6g02486 479 Gene3D Tetratricopeptide repeat domain 241 323 IPR011990 GO:0005515
Phco6g02486 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 260 294 IPR002885 -
Phco6g02486 479 NCBIfam pentatricopeptide repeat 334 366 IPR002885 -
Phco6g02486 479 NCBIfam pentatricopeptide repeat 297 330 IPR002885 -
Phco6g02486 479 NCBIfam pentatricopeptide repeat 402 436 IPR002885 -
Phco6g02486 479 NCBIfam pentatricopeptide repeat 367 401 IPR002885 -
Phco6g02486 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 365 399 IPR002885 -
Phco6g02486 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 435 465 IPR002885 -
Phco6g02486 479 Pfam PPR repeat 325 357 IPR002885 -
Phco6g02486 479 Pfam PPR repeat 430 463 IPR002885 -
Phco6g02486 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 295 329 IPR002885 -
Phco6g02486 479 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 290 466 - -
Phco6g02486 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 155 189 IPR002885 -
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g02486 6 46272826 46274265 Phco6g02486 6 46272826 46274265 ECH