Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02477 ATGAAGCAGTCCGCAATCACGTGCCACTCTGGCCCAAAGCCGAAAACCCAAAACAATACCCCACCTGCTCCCACATGCACACCACGCGTCACATCACGCGCCAACAAAGAGCCTCTTCGTCTTCTTCTTCGTCACAGACGAGGGTTAACGTGTTCACTTTACTTTCTGCGCTTCACTTCTCTCTTTCTCCTCGTTGGTGTATTCCGGAACTCGTGTTTTTCAGCGAAGATGCGTGAGATTCTTCACATCCAGGGAGGGCAGTGCGGGAACCAGATCGGAGCGAAGTTCTGGGAGGTGGTGTGCGCTGAGCACGGGATTGATTCTACGGGGAGGTACCAGGGGAACAATGAGTTGCAACTGGAGCGAGTGAACGTGTACTACAATGAGGCGAGTTGCGGGAGATTCGTCCCTAGGGCGGTGCTCATGGATCTGGAGCCAGGGACCATGGACAGCGTCAGATCTGGTCCCTACGGCCAGATTTTCCGCCCAGATAACTTCGTCTTCGGACAGTCCGGCGCCGGAAACAACTGGGCCAAGGGTCACTATACCGAGGGGGCTGAGTTAATTGATTCCGTTCTTGATGTTGTTAGGAAGGAGGCAGAAAACTGTGACTGCCTTCAAGGATTCCAGGTTTGCCACTCTCTCGGTGGTGGAACTGGTTCTGGAATGGGAACACTTTTGATCTCGAAGATCAGAGAAGAGTACCCTGATCGAATGATGCTCACATTCTCCGTGTTCCCATCCCCGAAGGTTTCCGACACAGTTGTTGAGCCATACAATGCAACTCTATCAGTGCACCAGCTCGTTGAGAATGCAGACGAGTGCATGGTTTTGGATAACGAAGCTCTCTACGACATCTGCTTCCGTACCCTTAAGCTCACCACTCCAAGCTTTGGAGATCTGAATCACCTAATTTCAGCCACCATGAGTGGTGTAACATGTTGTCTTCGATTCCCTGGTCAACTCAACTCAGATCTTCGCAAACTCGCCGTGAATCTCATTCCCTTCCCTCGTTTGCACTTCTTCATGGTAGGATTTGCTCCTCTCACTTCCCGTGGATCCCAACAGTACAGGGCTCTTACCGTACCCGAATTGACCCAACAAATGTGGGATGCCAAGAACATGATGTGTGCAGCCGATCCTCGTCATGGGCGTTACTTGACAGCTTCTGCAATGTTCCGTGGTAAGATGAGCACCAAGGAGGTCGACGAGCAGATGATCAATGTTCAGAACAAGAACTCATCCTATTTTGTGGAGTGGATCCCCAACAATGTGAAATCCACCGTATGTGATATCCCCCCAACTGGGCTCAAAATGGCATCAACCTTCATTGGGAATTCTACTTCTATACAGGAAATGTTCAGGAGGGTGAGTGAGCAATTCACGGCTATGTTCCGTAGAAAGGCTTTCTTGCACTGGTACACCGGAGAGGGTATGGATGAAATGGAGTTCACTGAGGCTGAGAGCAACATGAATGACCTTGTCTCGGAGTACCAGCAATACCAAGATGCAACTGCCGACGATGAGGGTTATGACTATGAAGACGAAGAAGATGCTCAGGAAGAGGAGGAATCTTAA 1578 0.5038 MKQSAITCHSGPKPKTQNNTPPAPTCTPRVTSRANKEPLRLLLRHRRGLTCSLYFLRFTSLFLLVGVFRNSCFSAKMREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGNNELQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADDEGYDYEDEEDAQEEEES 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02477 525 CDD beta_tubulin 78 502 - -
Phco6g02477 525 PRINTS Beta-tubulin signature 228 240 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Phco6g02477 525 PRINTS Beta-tubulin signature 405 419 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Phco6g02477 525 PRINTS Beta-tubulin signature 164 175 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Phco6g02477 525 PRINTS Beta-tubulin signature 321 334 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Phco6g02477 525 PRINTS Beta-tubulin signature 306 315 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Phco6g02477 525 PRINTS Beta-tubulin signature 117 134 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Phco6g02477 525 PRINTS Beta-tubulin signature 288 300 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Phco6g02477 525 PRINTS Beta-tubulin signature 423 446 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Phco6g02477 525 PRINTS Beta-tubulin signature 453 464 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Phco6g02477 525 PRINTS Beta-tubulin signature 184 202 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Phco6g02477 525 PRINTS Beta-tubulin signature 387 405 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Phco6g02477 525 PRINTS Beta-tubulin signature 488 506 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Phco6g02477 525 PRINTS Beta-tubulin signature 341 357 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Phco6g02477 525 PRINTS Tubulin signature 169 180 IPR000217 GO:0005874|GO:0007017
Phco6g02477 525 PRINTS Tubulin signature 182 206 IPR000217 GO:0005874|GO:0007017
Phco6g02477 525 PRINTS Tubulin signature 266 286 IPR000217 GO:0005874|GO:0007017
Phco6g02477 525 PRINTS Tubulin signature 446 474 IPR000217 GO:0005874|GO:0007017
Phco6g02477 525 PRINTS Tubulin signature 208 226 IPR000217 GO:0005874|GO:0007017
Phco6g02477 525 PRINTS Tubulin signature 227 248 IPR000217 GO:0005874|GO:0007017
Phco6g02477 525 PRINTS Tubulin signature 252 265 IPR000217 GO:0005874|GO:0007017
Phco6g02477 525 PRINTS Tubulin signature 86 106 IPR000217 GO:0005874|GO:0007017
Phco6g02477 525 PRINTS Tubulin signature 127 146 IPR000217 GO:0005874|GO:0007017
Phco6g02477 525 FunFam Tubulin beta chain 77 338 - -
Phco6g02477 525 Gene3D Tubulin/FtsZ, GTPase domain 77 338 IPR036525 -
Phco6g02477 525 Gene3D Helix hairpin bin 450 506 IPR023123 -
Phco6g02477 525 MobiDBLite consensus disorder prediction 507 525 - -
Phco6g02477 525 Pfam Tubulin C-terminal domain 337 458 IPR018316 -
Phco6g02477 525 SUPERFAMILY Tubulin nucleotide-binding domain-like 77 319 IPR036525 -
Phco6g02477 525 Gene3D - 339 449 IPR037103 -
Phco6g02477 525 MobiDBLite consensus disorder prediction 499 525 - -
Phco6g02477 525 PANTHER TUBULIN 79 503 IPR000217 GO:0005874|GO:0007017
Phco6g02477 525 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 216 222 IPR017975 GO:0005525|GO:0005874|GO:0007017
Phco6g02477 525 SMART Tubulin_4 123 320 IPR003008 GO:0005525
Phco6g02477 525 SMART Tubulin_C_4 322 459 IPR018316 -
Phco6g02477 525 SUPERFAMILY Tubulin C-terminal domain-like 320 505 IPR008280 -
Phco6g02477 525 FunFam Tubulin beta chain 450 511 - -
Phco6g02477 525 Coils Coil 484 504 - -
Phco6g02477 525 Pfam Tubulin/FtsZ family, GTPase domain 79 287 IPR003008 GO:0005525
Phco6g02477 525 MobiDBLite consensus disorder prediction 1 30 - -
Phco6g02477 525 FunFam Tubulin beta chain 340 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02477 Phco-Chr6 46211345 46213789 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g02477 6 46211345 46213789 Phco6g02477 6 46211345 46213789 ECH