Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02439 ATGTATCCACGACATGCGAATTACTTTGTGATTGGTGTGATCTCCTTAGTTGTGATATTGGGATCAGAAAATGTGAAGATTGCAGAAGGCAAGGTGGTGAATGGGGGAAGTGAATACCCAGCCATTAATTGCAGAAAGCACAGTGCAGTTTTGACAGATTTTGGAGGAGTTGGTGATGGCGTTACATCCAACACCAAAGCCTTTCGAAATGCAATAAGTAATCTGAGTCAGCATGCATCTGATGGGGGCGCACAACTCATCGTGCCACCCGGAAAATGGCTAACGGGACCCTTTAATCTCACAAGCCATTTCACTCTTTTTCTTCACAAAAATGCTATTATTCTTGCTTCTCAGGATGAATCAGAATGGCCTCATCTTCCTGCATTACCTTCTTATGGAAGAGGGAGAGATGCTCCTGCTGGAAGGTTCAGTAGTCTAATTTTTGGAACCCATCTTACTGATGTTGTAATTACAGGTGAAAATGGTAAAATTGATGGACAAGGAGTTTATTGGTGGGAGAAGTTCCATAAGAAACAATTGAATCTCACCAGGCCATACATGATTGAGCTCATGTACTCTGATCAAATCCAGATATCATCTCTCACTTTATTGAACTCTCCATCCTATTTTATCCATCCAATTTACAGCAGTAACATAATAATGCAAGGGCTTACCATCAATGCTCCCATAGGCTCTCCCAACACAGATGGGATAGATCCAGATTCATGTAGAAATGTTAGGATTGAAGATTGCAACATTGTTTCTGGTGATGATTGCATTTCAATAAAAAGTGGATGGGATGAGTATGGGATTAAATTTGCAATGCCATCCCAACACATAGTGATTAGAAGGATTACTTGTAACTCCCCTGATAGTGCCTTGATTGCTTTAGGCAGTGAAATGTCTGGAGGAATCTCCGATGTTAGAGCTGAAGATCTCATTGCCATCAACACTGAATCAGCTGTTAGAATCAAAACAGCAGTTGGTAGAGGTGGATATGTGAAGGACATATTTGTGAAAGGAATGAACCTCACAACCATGAAATATGTGTTTTGGATGACTGGTTCTTATGGATCACACCCTGATCCTCACTATGATCCCAAAGCACTACCCAAAATTACTGGGATAAATTATAGAGACGTTGCTGCAGCAAATGTCAAATATTCTGCAAGACTCGACGGAATTTCCAACGACCCTTTTACCAATATTTGCATTTCTAATGTCTCTATCCAATTGAATGAACAACGAAAGAAGCTTCAATGGAATTGCACTAATGTTTCTGGAGTCACAAGCAATGTCACTCCTCCTCCTTGCGAGTTGTTGCCAGAGAAAGGGCCACTCCAGTGTCCTTTTCCAACTAACTCTCTGCCCATTGAATCTGTTAAGCTGAAGTCTTGTTACACTAAAGTCTTCTTCTAA 1419 0.4087 MYPRHANYFVIGVISLVVILGSENVKIAEGKVVNGGSEYPAINCRKHSAVLTDFGGVGDGVTSNTKAFRNAISNLSQHASDGGAQLIVPPGKWLTGPFNLTSHFTLFLHKNAIILASQDESEWPHLPALPSYGRGRDAPAGRFSSLIFGTHLTDVVITGENGKIDGQGVYWWEKFHKKQLNLTRPYMIELMYSDQIQISSLTLLNSPSYFIHPIYSSNIIMQGLTINAPIGSPNTDGIDPDSCRNVRIEDCNIVSGDDCISIKSGWDEYGIKFAMPSQHIVIRRITCNSPDSALIALGSEMSGGISDVRAEDLIAINTESAVRIKTAVGRGGYVKDIFVKGMNLTTMKYVFWMTGSYGSHPDPHYDPKALPKITGINYRDVAAANVKYSARLDGISNDPFTNICISNVSIQLNEQRKKLQWNCTNVSGVTSNVTPPPCELLPEKGPLQCPFPTNSLPIESVKLKSCYTKVFF 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02439 472 SUPERFAMILY Pectin lyase-like 44 449 IPR011050 -
Phco6g02439 472 Gene3D - 15 434 IPR012334 -
Phco6g02439 472 PANTHER PECTIN LYASE-RELATED 29 459 - -
Phco6g02439 472 Pfam Glycosyl hydrolases family 28 145 427 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02439 Phco-Chr6 45812640 45815794 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g02439 6 45812640 45815794 Phco6g02439 6 45812640 45815794 ECH