Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01997 ATGTTCTACTTCCTCAAAAGATTGTGCCTTCTATGTTTCCTTTTACTATCCTTTGAAGTTTCAATCTGGTCGTGTGCTTCACACACAGACTTGGCTTCTTGCTTGCTTAATCACAATATCAAAAACTTTACCACTCTCCCTTACAAAGAACATGACCAACCCTCTTCCCATGATTACTTCAAAATTCTTAATTTTTCCATCCAAAATCTTCGGTTCGCAGAACCCGTGATTCCTAAGCCAATAGCCATTGTATTGCCAGGGAGTTTGGAGCAGCTGCAGAAAAGTGTAGCATGCAGTAGAGAAAGTTCCATGGAAATCAGAGTAAGATGTGGTGGACACAGCTATGAAGGGACTTCGTATGTGGCTGATGATGGCACTCCTTTTGTGATCATTGACATGATGAATTTGAACCATGTTTGGGTGAACATGGAGACAGAAACAGCCTGGGTTGAAGGTGGTGCAACATTGGGAGAGACTTACTATGCAATCTCTCAAGCAAGCAATGAATATGGATTCTCAGCTGGGTCATGTCCAACTGTTGGAGTCGGGGGACACATTGGTGGTGGTGGTTTTGGGTTCTTGTCTAGAAAATATGGTCTTGCAGCGGACAACGTAGTGGATGCCCTTCTCGTTGATGCTGATCAAAATTTGTTGAACCGTGAAACCATGGGAGAAGATGTGTTTTGGGCTATTAGAGGAGGAGGAGGTGGTCTTTGGGGGATCATTTATGCCTGGAAAATCCAGTTGTTGAAAGTGCCACAGGTTGTAACCAGTTTCACTGTATCAAGAACAGGCACAAAAAGTCATGTTGCCAATCTGGTGCACAAATGGCAATATGTGGCACCCAACTTGGAAGATGACTTCTATTTGTCATGCTTTGTTGGTGCTGGTTTGCCCCAAGCTAAAACCAAAGGGTTATCAGTAACACTTAAAGGTTTCTATCTTGGTCCTAAAACCAGTGCCATATCCATTCTACACCATGCTTTTCCGGAGTTGGGTCTTACAGAAGAAGAATGCATAGAATTGAGTTGGATTCAGTCAATTGTTTTCTTCTCTGGCCTAAGTGATGGAGCGTCGGTCTCTGACTTGAAAAACAGGTATCTGAAAGAAAAAGAATATTTCAAGGCCAAATCAGATTATGTAAAAAACCATGTTCCTCTTGTGGGCATAGAAACTGCACTGGACATCCTCGAAAAGGAGCCAAAAGGGTATGTTATTCTGGACCCTTACGGTGGAAAGATGCATAATATAAGCAATGATGCAATTGCTTTTCCCCACAGAAGAGGAAACCTGTTTACAATACAGTACCTGATCTATTGGAAAGAAGCTGAGAAAGAGAAAAGCAGTGATTATGTAGATTGGATAAGAGGGTTCTATGATGGTATGAGTCCCTTTGTTTCATCTGCTCCAAGGGCTGCATATATTAATTACATGGACTTTGACCTTGGAGTGAGGAAGAGGATAAGAAGTTATGGTGATGTGGAAGATGGTGTGGAAAGTGCAAGGGATTGGGGTGAAAAGTACTTCCTCAGTAACTACGACAGACTGGTGAGGGTGAAGACTATGGTTGATCCTAACAACGTTTTCACCAATGAACAGGGCATTCCTCCTATCTCTTTAGCCTCTCCCAGTTTCAAAGCGCAGACCAAAGCAATGATGCCAGATTTGTAA 1671 0.4255 MFYFLKRLCLLCFLLLSFEVSIWSCASHTDLASCLLNHNIKNFTTLPYKEHDQPSSHDYFKILNFSIQNLRFAEPVIPKPIAIVLPGSLEQLQKSVACSRESSMEIRVRCGGHSYEGTSYVADDGTPFVIIDMMNLNHVWVNMETETAWVEGGATLGETYYAISQASNEYGFSAGSCPTVGVGGHIGGGGFGFLSRKYGLAADNVVDALLVDADQNLLNRETMGEDVFWAIRGGGGGLWGIIYAWKIQLLKVPQVVTSFTVSRTGTKSHVANLVHKWQYVAPNLEDDFYLSCFVGAGLPQAKTKGLSVTLKGFYLGPKTSAISILHHAFPELGLTEEECIELSWIQSIVFFSGLSDGASVSDLKNRYLKEKEYFKAKSDYVKNHVPLVGIETALDILEKEPKGYVILDPYGGKMHNISNDAIAFPHRRGNLFTIQYLIYWKEAEKEKSSDYVDWIRGFYDGMSPFVSSAPRAAYINYMDFDLGVRKRIRSYGDVEDGVESARDWGEKYFLSNYDRLVRVKTMVDPNNVFTNEQGIPPISLASPSFKAQTKAMMPDL 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01997 556 Gene3D - 30 136 IPR016167 -
Phco6g01997 556 ProSiteProfiles PCMH-type FAD-binding domain profile. 76 252 IPR016166 GO:0071949
Phco6g01997 556 Gene3D - 141 537 IPR016169 -
Phco6g01997 556 Pfam FAD binding domain 80 217 IPR006094 GO:0050660
Phco6g01997 556 PANTHER OS08G0158400 PROTEIN 26 538 - -
Phco6g01997 556 Pfam Berberine and berberine like 473 536 IPR012951 GO:0016491|GO:0050660
Phco6g01997 556 Gene3D - 255 469 - -
Phco6g01997 556 SUPERFAMILY FAD-binding/transporter-associated domain-like 57 253 IPR036318 GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01997 Phco-Chr6 39594014 39595684 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g01997 6 39594014 39595684 Phco6g01997 6 39594014 39595684 ECH