Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01449 ATGCGGACATCGCCAGGCGCGAGAGACAAAGATCACCCGCGTCGGCTGTGGCACGATCCCAGATCAACGGAGATGAATAACGCCCGTCTGATTTCTGGTGGAGGATGGCTACTCCGGCGACTTTGCACGGCGGCTGAGAGTCCAGCGAAAAATCCAAACCTCTATCGAATATTATCGGCGTTGGACATGACTGGAGGAAGCGTGTCGGAAACTTTGAACAGCTATATAATGCAAGGCAAAGCCGTAAAAAAAACAGAACTCGAAAGATGTGTTGAGCAGCTCCGAAGGTATCGCAAATTTCAGCATGCACTCGAGATAATAGAATGGATGGAGATGAGGAAAATTAACTTTTCCTGGAATAATTATGCAGTGCAATTAGATCTTGTGTCCAAGACCAAAGGGGTGGTTGAGGCTGAGAATTTTTTCAATGGTCTTCCTGATCCTGCCAAGAACAAGTATACGTATGGTGCTCTCTTGAACTGTTACTGCAAGGAACTAATGAAAGACAAGGCGTTGAGTCATTTTGACAAAATGGATGAATTGGGTTATGTCACTTCTCTGGCCTTCAACAATTTGATGAGTCTCTTTATGAGAAATGGTGAACCCCAGAAAGTGCCTGAACTGGTGGGGGTAATGAAGAGGAGAAGCATTCCCTTGTCTTCATTCACGTATCATATCTGGATGAACAGCTGCGCCTCTTCGGGAGATCTTGATGGGGTGGAGAGAGTCTATGAGGAGATGAGAACCGAAGAACTAATTAGTTGGCAGACTTACAGCAACCTTGCTGCTATTTATGTAAAGGTTAAGGATTTTGAGAAGGCTGAAAAGATGCTTAAGATGCTGGAGAAACAAGTGAAGCCACGGCACCGTGATGCTTACCATTGCTTGCTTGGTCTCTATGGTGGGACTGGTAATCTTGAAGAGGTTCATAGAGTGTGGAATTCCCTCAAGTCTGTCTCCCCTGTGACCAATTTTAGCTATCTTGTCTTGCTAAGTACCCTCCGAAGGCTTAATGATATAGAGGGCTTAACAAAATACTTTAAGGAGTGGGAAGCTAGTTGTGTTACCTATGATGCGAGGTTAGTCGGTGTCTGTGTTAGTGCTTACTTGGGTCAGAACATGGTGGAAGAAGCTGCATTGGTGTTTGAGGGGGCTATTAGGAGGAGCAAAAGGCCTTTGTTTAGGATTGAGGAAATGTTTATGTTGTATTTCTTGGAGAAACATCAGTTGGAGGCTGCTGTGAGGCACTTGCAGACGGCGTTTTCAGAAGTCAAGGGTGATGATGAATGGCATCCTTCACCGAAAGTTGTTGGGGCTTTTCTGAAGTACTATGAAGAAGAGACGGATGTGGATGGTGTTGATGAGTTGTGTAAGATTCTCAAGGCTAACAATATTGATGATTCCTGGATTAAAACTTGCATTACTGCTTCCAAATAG 1437 0.4468 MRTSPGARDKDHPRRLWHDPRSTEMNNARLISGGGWLLRRLCTAAESPAKNPNLYRILSALDMTGGSVSETLNSYIMQGKAVKKTELERCVEQLRRYRKFQHALEIIEWMEMRKINFSWNNYAVQLDLVSKTKGVVEAENFFNGLPDPAKNKYTYGALLNCYCKELMKDKALSHFDKMDELGYVTSLAFNNLMSLFMRNGEPQKVPELVGVMKRRSIPLSSFTYHIWMNSCASSGDLDGVERVYEEMRTEELISWQTYSNLAAIYVKVKDFEKAEKMLKMLEKQVKPRHRDAYHCLLGLYGGTGNLEEVHRVWNSLKSVSPVTNFSYLVLLSTLRRLNDIEGLTKYFKEWEASCVTYDARLVGVCVSAYLGQNMVEEAALVFEGAIRRSKRPLFRIEEMFMLYFLEKHQLEAAVRHLQTAFSEVKGDDEWHPSPKVVGAFLKYYEEETDVDGVDELCKILKANNIDDSWIKTCITASK 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01449 478 Pfam PPR repeat 257 283 IPR002885 -
Phco6g01449 478 Pfam PPR repeat 153 182 IPR002885 -
Phco6g01449 478 MobiDBLite consensus disorder prediction 1 20 - -
Phco6g01449 478 SUPERFAMILY TPR-like 220 331 IPR011990 GO:0005515
Phco6g01449 478 FunFam Pentatricopeptide repeat-containing protein mitochondrial 84 291 - -
Phco6g01449 478 PANTHER OS12G0527900 PROTEIN 47 473 - -
Phco6g01449 478 NCBIfam pentatricopeptide repeat 153 184 IPR002885 -
Phco6g01449 478 NCBIfam pentatricopeptide repeat 222 250 IPR002885 -
Phco6g01449 478 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 220 254 IPR002885 -
Phco6g01449 478 Gene3D Tetratricopeptide repeat domain 83 255 IPR011990 GO:0005515
Phco6g01449 478 Gene3D Tetratricopeptide repeat domain 256 473 IPR011990 GO:0005515
Phco6g01449 478 Pfam PPR repeat family 187 232 IPR002885 -
Phco6g01449 478 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 151 185 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01449 Phco-Chr6 14954118 14958508 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g01449 6 14954118 14958508 Phco6g01449 6 14954118 14958508 ECH
Phco6g01449 6 14954118 14958508 Phco2g02214 2 52807982 52812538 PCT