Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01362 ATGCAGAAACTAGTTTTCAGTGTTCTAATACTAGTTGTGGTGTTATTCACCACAGAACTTAGAGTAGCATCCGCAGGTTGGTTGCAAGCTCATGCAACTTTCTATGGTGGAAGTGATGCCTCAGGAACAATGGGTGGGGCATGTGGCTATGGAAATCTCAACACAGATGGTTATGGAATAAAAACAGCTGCTTTGAGTACTGCTTTGTTTAATGATGGCAAGTCATGTGGTGGTTGCTATCAGATAGTTTGTGACGCAAACCAAGTGCCCCAATGGTGCCTCAGGGGCACTTCCATTACAATCACTGCTACAAATTTCTGCCCTCCAAACTATGCACTACCCAGTGACAATGGGGGCTGGTGTAATCCTCCTAGACCACACTTTGACATGTCTCAACCTGCCTTTGAGATGATTGCCAAATACAAGGCTGGAATTGTCCCAATTTTTTACAGAAAAGTTGGGTGCAAAAGAAGTGGAGGGATCAGATTTACCATCAATGGTAAGGACTATTTCGAACTGGTGCTTATAAGCAATGTAGGAGGAGCAGGGGATATCTCTCTAGTTTGGATCAAAGGGTCCAAAATGAGTAACTGGGAATCTATGTCAAGGAATTGGGGTTCTAACTGGCAAAGCTTAAGCTACCTCAACGGCCAGAGCTTGTCCTTCAGAGTCCAACTCAGCAATGGAAAGACTCTCACAGCTAATGATGTGGCACCGTCCAATTGGAGATTTGGCCAGTCTTTCATTAGCAAGGTTCAGTTATGA 765 0.4431 MQKLVFSVLILVVVLFTTELRVASAGWLQAHATFYGGSDASGTMGGACGYGNLNTDGYGIKTAALSTALFNDGKSCGGCYQIVCDANQVPQWCLRGTSITITATNFCPPNYALPSDNGGWCNPPRPHFDMSQPAFEMIAKYKAGIVPIFYRKVGCKRSGGIRFTINGKDYFELVLISNVGGAGDISLVWIKGSKMSNWESMSRNWGSNWQSLSYLNGQSLSFRVQLSNGKTLTANDVAPSNWRFGQSFISKVQL 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01362 254 Pfam Lytic transglycolase 62 150 IPR009009 -
Phco6g01362 254 Gene3D - 160 254 IPR036749 -
Phco6g01362 254 FunFam Expansin 17 156 - -
Phco6g01362 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 170 250 IPR007117 -
Phco6g01362 254 SUPERFAMILY Barwin-like endoglucanases 26 178 IPR036908 -
Phco6g01362 254 SUPERFAMILY PHL pollen allergen 157 250 IPR036749 -
Phco6g01362 254 PANTHER EXPANSIN-A15 8 250 IPR002963 GO:0009664
Phco6g01362 254 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Phco6g01362 254 PRINTS Expansin signature 207 228 IPR002963 GO:0009664
Phco6g01362 254 PRINTS Expansin signature 118 135 IPR002963 GO:0009664
Phco6g01362 254 PRINTS Expansin signature 171 192 IPR002963 GO:0009664
Phco6g01362 254 PRINTS Expansin signature 159 171 IPR002963 GO:0009664
Phco6g01362 254 PRINTS Expansin signature 86 97 IPR002963 GO:0009664
Phco6g01362 254 PRINTS Expansin signature 135 148 IPR002963 GO:0009664
Phco6g01362 254 PRINTS Expansin signature 99 109 IPR002963 GO:0009664
Phco6g01362 254 PRINTS Expansin signature 236 252 IPR002963 GO:0009664
Phco6g01362 254 SMART dpbb_1 62 150 IPR007112 -
Phco6g01362 254 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576
Phco6g01362 254 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Phco6g01362 254 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Phco6g01362 254 PRINTS Expansin/Lol pI family signature 236 250 IPR007118 GO:0005576
Phco6g01362 254 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Phco6g01362 254 PRINTS Expansin/Lol pI family signature 198 212 IPR007118 GO:0005576
Phco6g01362 254 Pfam Expansin C-terminal domain 161 239 IPR007117 -
Phco6g01362 254 Gene3D - 15 156 IPR036908 -
Phco6g01362 254 CDD DPBB_EXPA_N 26 155 - -
Phco6g01362 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 160 IPR007112 -
Phco6g01362 254 FunFam Expansin 160 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01362 Phco-Chr6 13717208 13718207 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g01362 6 13717208 13718207 Phco6g01362 6 13717208 13718207 ECH
Phco2g02518 2 55104538 55105567 Phco6g01362 6 13717208 13718207 PCT