Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01305 ATGCTGCAGTGCATATTTCTCCTCTCAGATGCCGGAGAGGTAAGGCTAGAGAAACAGCTTTCGGGGCACTTCGTCGATCGCTCCATTTGTGCCTGGTTCTGGGAACAAGCCGTTTCACTTGGCGACTCCTTCAAGCAACAACCAGTGATTACCTCTCATACGCATTACATTTTCCAAGTTTTTCGTGATGGAATCACTTTTTTGGGGTGCACGCAAATTGAAATGCCACCCTTGATGGCCATTGAGTTTCTTTGTAGGGTAGCTGATGTCCTCAATGATTATTTTGGGACCTTAAACGAAGACATAATTAAAGACAACTTTGTCATTGTGTACGAGCTGTTGGATGAGATGATAGATAATGGCTTCCCCTTAACTACAGAACCTAGTAACCTGCGAGAGATTATTAATCCGCCAAATGTGGTTAAAAAAGCCTTGAGCATTGTGACCGGTAGCAATTCAAATGTGAGTGATACCCTTCCTAGGGCTACCGCATCTTGTATTCCCTGGAGAACATCAGAGCCAAAGTACCCCAACAATGAAGTATATGTAGAACTTGTTGAAGAAATGGATGCGACTATTAACAGGGATGGAGGTTTGTTGAAATGTGAGATCTATGGTGAAGTTCAAGTAAATTCCCGTATCTCAGGTTTTCCTGATTTAACCCTTTCATTTACAAATCCTTCCGTCCTAGATGATGTCAGGTTCCATCCGTGTGTTCGTTTTCGGCCTTGGGAGTCTCATCAAATTCTTTCTTTTGTGCCTCCTGATGGACAATTTAAGCTTATGAGCTACAGAGTAAGAAAGTTGAAAAGCACCCCAATATATGTAAAGCCACAGTTAATTTCGGATGGTGGGACATGTCGTCTTAGTGTATTGGTTGGAATAAGAAATGATCCTGGAAAAATGATCGACTCGGTTACTGTTCAGTTTCAGCTCCCTCCGTTCATCTTATCAGCTGATCTGACTTCAAATCATGGAACAGTGAACATCCTTTCTAAAAAGACATGCATATGGTCCATTGGTCGGATTCCAAAAGATAAAGCCCCTTCCATGTCTGGAATATTGGTGGTTGAAACTGGTTTGGAGCGCCTTCATGTCTTCCCCTCATTTCAAGTGGGTTTTAGGATCATGGGTGTCGCCCTCTCTGGTCTGCAAATAGATAAACTGGATCTGAAGATTGAACCATGCCGATTTTACAAAGGTTTTAGAGCTCTTACTCGGGCAGGTCAATTTGATGTGGTTTCTTTTGTAAAATTTCGTCTCTGTTGCCACTCCTATTTCTTTCTCATAATGAACACAATTGCCCTTATTCGCAACCGCGCCATGAAATCCATTCGCAGGATTCTCATCAGTTCTCGGAACTCATCTCCTTTTCCGTCCACACCTGCAAATTATGATTACTCTCCTTCTATTGCTAACAATTTGCCGAAACCTCGTTTCAATCATCACCACCCTATGCAAATGCATCGAATAAAGGGTAATGCACAGAAATTTTTTGGCTTTCCCTCTTCGAATTTGGCCCCTTTATCAATGCCCTTTAGTTTGATCACATCCAACGGGGACGTCTCTACCTTCAAGTTTCGAAATTGCTCGACCTCTGTGGAGACCCGTGGCCATGACAACAATTTTGAGAGGATTTACGTACAGGGTGGCATGAATAACGTGAAGCCGTTGGTGGTGGAAAGTTCTCATGAGGATGTTACAGATGAGAGAAATTTAGGTGGTGAAGTGAATGTGAGTGTGGAGAAGAGTAAATGGGAGGAGTCAGAGGTGGAAAAACAAGCATGGAAATTGTTGCAGGGAGCCGTTGTGACTTATTGTGGCAACCCTGTGGGGACTGTGGCTGCAAATGATCCTGGTGACAAGCTGCCCTTGAATTATGATCAGGTCTTTCTTAGGGATTTTATCCCATCAGCACTTGCTTTCTTGCTTAGAGGAGAAAGTGAGATTGTCAAGAACTTTCTTCTTCACACCTTGCAGTTGCAGAGCTGGGAGAAAACAGTGGACTGCTACAGTCCAGGGCAGGGCTTGATGCCAGCAAGTTTCAAAGTTAGAAGTGTAGCTCTGGACGAAGATAATCATGAAGAAGTTTTAGATCCTGATTTTGGGGAATCAGCCATTGGTCGCGTTGCACCTGTAGATTCAGGATTGTGGTGGATCATCCTCTTGCGAGCTTACGGAAAGCTCACTGGAGATTGCACCTTGCAAGAAAGGGCCGATGTTCAAACAGGCTTGAAAATGATCCTTAACTTGTGTTTAACAGATGGTTTCGATATGTTTCCTTCTCTGCTAGTCACTGATGGCTCTTGCATGATAGACAGGAGGATGGGCATTCATGGTCACCCCCTTGAGATCCAAGCACTATTTTACTCAGCTCTTCGCTGCTCACGCGAGATGCTTGTTGTAACCGAGGGAACCGATAATCTTATTAGAGCTATTAACAACCGACTCAGTGCTCTGTCATTCCACATTAGAGAATATTATTGGGTGGACATGAAAAAGATGAATGAAATATACAGGTATAAAACAGAAGAGTACTCCATGGATGCCATTAATAAATTCAACATCTATCCCGAACAAATTCCACTTTGGTTAATGGATTGGATTCCAGAAGAAGGTGGATATCTGATTGGGAATTTACAGCCAGCTCACATGGACTTCAGGTTTTTCACACTTGGAAATTTTTGGTCCATTGTCTCATCATTGGGCACCCCAAGACAGAACCAGGCTATTTTAAATCTGGTAGAAGCGAAATGGGATGATCTTGTGGGCCATATGCCTCTTAAGATATGTTATCCTGCCCTGGATAATGAAGAGTGGCGCATAACTACTGGCTGTGACCCAAAGAATACCCCTTGGTCATATCACAATGGTGGATCTTGGCCAACCCTTCTGTGGCAGTTCACGCTGGCATGCATCAAAATGGGGAGAATTGAACTTGCCCAGAAAGCAGTTGCTTTGGCTGAGAAAAGACTGCCAGTTGATTCTTGGCCTGAATACTATGATACACGCACTGGAAAATTTATTGGAAAACAAGCCCGGATGTATCAAACATGGACCATAGCTGGTTTCCTTACATCTAAGATGCTTTTGAAAGATCCTGAGATGGCATCCAGGTTATTCTGGGAGGAGGATTACGAGCTTCTAGACATATGTGTTTGTGGACTTAGCAAGAATGGCAGGAAAAGGTGTTCCCGTGGTGCTGCCAGGTCTCAGATTCTTGTATGA 3228 0.4349 MLQCIFLLSDAGEVRLEKQLSGHFVDRSICAWFWEQAVSLGDSFKQQPVITSHTHYIFQVFRDGITFLGCTQIEMPPLMAIEFLCRVADVLNDYFGTLNEDIIKDNFVIVYELLDEMIDNGFPLTTEPSNLREIINPPNVVKKALSIVTGSNSNVSDTLPRATASCIPWRTSEPKYPNNEVYVELVEEMDATINRDGGLLKCEIYGEVQVNSRISGFPDLTLSFTNPSVLDDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVRKLKSTPIYVKPQLISDGGTCRLSVLVGIRNDPGKMIDSVTVQFQLPPFILSADLTSNHGTVNILSKKTCIWSIGRIPKDKAPSMSGILVVETGLERLHVFPSFQVGFRIMGVALSGLQIDKLDLKIEPCRFYKGFRALTRAGQFDVVSFVKFRLCCHSYFFLIMNTIALIRNRAMKSIRRILISSRNSSPFPSTPANYDYSPSIANNLPKPRFNHHHPMQMHRIKGNAQKFFGFPSSNLAPLSMPFSLITSNGDVSTFKFRNCSTSVETRGHDNNFERIYVQGGMNNVKPLVVESSHEDVTDERNLGGEVNVSVEKSKWEESEVEKQAWKLLQGAVVTYCGNPVGTVAANDPGDKLPLNYDQVFLRDFIPSALAFLLRGESEIVKNFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVRSVALDEDNHEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKLTGDCTLQERADVQTGLKMILNLCLTDGFDMFPSLLVTDGSCMIDRRMGIHGHPLEIQALFYSALRCSREMLVVTEGTDNLIRAINNRLSALSFHIREYYWVDMKKMNEIYRYKTEEYSMDAINKFNIYPEQIPLWLMDWIPEEGGYLIGNLQPAHMDFRFFTLGNFWSIVSSLGTPRQNQAILNLVEAKWDDLVGHMPLKICYPALDNEEWRITTGCDPKNTPWSYHNGGSWPTLLWQFTLACIKMGRIELAQKAVALAEKRLPVDSWPEYYDTRTGKFIGKQARMYQTWTIAGFLTSKMLLKDPEMASRLFWEEDYELLDICVCGLSKNGRKRCSRGAARSQILV 1075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01305 1075 Gene3D Mu homology domain, subdomain B 167 410 - -
Phco6g01305 1075 Gene3D - 1 142 - -
Phco6g01305 1075 PRINTS Clathrin coat assembly protein signature 230 257 IPR001392 GO:0006886|GO:0016192|GO:0030131
Phco6g01305 1075 PRINTS Clathrin coat assembly protein signature 100 127 IPR001392 GO:0006886|GO:0016192|GO:0030131
Phco6g01305 1075 PRINTS Clathrin coat assembly protein signature 337 348 IPR001392 GO:0006886|GO:0016192|GO:0030131
Phco6g01305 1075 FunFam AP-2 complex subunit mu, putative 1 142 - -
Phco6g01305 1075 SUPERFAMILY SNARE-like 1 141 IPR011012 -
Phco6g01305 1075 SUPERFAMILY Six-hairpin glycosidases 595 1026 IPR008928 GO:0005975
Phco6g01305 1075 Gene3D - 626 1025 IPR012341 GO:0005975
Phco6g01305 1075 CDD AP3_Mu_N 3 142 - -
Phco6g01305 1075 Gene3D Mu homology domain, subdomain B 272 412 - -
Phco6g01305 1075 PANTHER - 556 1058 IPR024746 GO:0033926
Phco6g01305 1075 Pfam Alkaline and neutral invertase 595 1034 IPR024746 GO:0033926
Phco6g01305 1075 CDD AP-3_Mu3_Cterm 167 413 - -
Phco6g01305 1075 ProSiteProfiles Mu homology domain (MHD) profile. 178 414 IPR028565 -
Phco6g01305 1075 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 167 412 IPR036168 -
Phco6g01305 1075 FunFam probable alkaline/neutral invertase B 621 1027 - -
Phco6g01305 1075 Pfam Adaptor complexes medium subunit family 167 412 IPR028565 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01305 Phco-Chr6 13115089 13122551 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g01305 6 13115089 13122551 Phco6g01305 6 13115089 13122551 ECH
Phco2g02563 2 55463804 55466710 Phco6g01305 6 13115089 13122551 PCT