Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00913 ATGGGTAAGATTCTGAGAGAAACCGCAAGGCCGTCCTTCAATTGTTCATCGGCGTCACCGTCGTCAGCACCGCCGGCGACAACGTCGTCGACGTCGGTGACCGACACGGTGAGGGGATCGCACCGGTTCAAGATCACGGGGTATGCTCTGTCGAAGGGGATTGGGATTGGGAAGTACGTAGGGTCGGAGACATTTTCGGTGGGAGGGTACGATTGGGCGATCTATTTTTACCCTGATGGGAAGAGCGTGGAGGACAATGCGTCGTACGTTTCTCTCTTCATCGCGCTCGCTAGCGAAGGGGCAGATGTTAGGGCGCTTTTTGAGCTAACGCTTTTGGATCAGAGTGGGAAGGAGAGGCATAAGGTGCATAGCCATTTCGAGAGGGCCCTCGAGAGTGGACCCTACACGTTAAAATACCGTGGTAGCATGTGGGGTTACAAGCGGTTTTTTAAGAGAGCAGCACTAGAGACATCAGATTACCTGAAAGACGATTGCCTTAGTGTTAATTGTAGTGTTGGTGTTGTGAAATCACACACAGAGGGCCCTAAAATATATAAAATTCCAATTATGCCTTCTAACATTGGTCAACAACTTGGGAAGCTATTAGAAAGTGGGAAAGACAGTGATGTAAGTTTTGAAGTGAATGGAGAAATTTTTGCTGCTCATAAATTGGTACTAGCTGCTCGCTCACCAGTTTTCAGGGCCCAACTTTTTGGTCCTATGAAAGATCACAATACTCATTGTATAAAAGTTGAAGACATGGAGGCTCCAGTTTTCAAGGCATTGCTTCATGTTATATATTGGGACTCACTACCTGACATGCTAGAGCTTACTGGGTTGAGCTCAAAAGGGGCTACTACCTTGATGGCTCAGCATCTGCTAGCAGCAGCTGATCGGTATGGCTTAGAGAGAGTTAGGCTGATGTGTGAAACAAGTCTCTGTGAAGATGTTGCAATAAACACTGTTGCTACGACTCTGGCCTTGGCAGAGCAGCACCATTGTTTCCAACTGAAAGCAGTCTGTCTTAAATTCGTTGCACAGCCTGAAAATCTCAGAGCTGTGATGCAAACCGATGGTTTTGAGTACTTGAAAGAAAGTTGCCCATCTGTTTTGACTGAGCTTTTAGAGTATGTGGCTAGATTTACCGAGCATTCAGACTACTTGTGCAAGCATAGGAATGAAGCAATACTTGATGGCAGCGACATAAATGGAAGGAGGGTGAAGCAAAGGCTATAG 1236 0.4668 MGKILRETARPSFNCSSASPSSAPPATTSSTSVTDTVRGSHRFKITGYALSKGIGIGKYVGSETFSVGGYDWAIYFYPDGKSVEDNASYVSLFIALASEGADVRALFELTLLDQSGKERHKVHSHFERALESGPYTLKYRGSMWGYKRFFKRAALETSDYLKDDCLSVNCSVGVVKSHTEGPKIYKIPIMPSNIGQQLGKLLESGKDSDVSFEVNGEIFAAHKLVLAARSPVFRAQLFGPMKDHNTHCIKVEDMEAPVFKALLHVIYWDSLPDMLELTGLSSKGATTLMAQHLLAAADRYGLERVRLMCETSLCEDVAINTVATTLALAEQHHCFQLKAVCLKFVAQPENLRAVMQTDGFEYLKESCPSVLTELLEYVARFTEHSDYLCKHRNEAILDGSDINGRRVKQRL 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00913 411 SMART BTB_4 208 317 IPR000210 GO:0005515
Phco6g00913 411 ProSiteProfiles MATH/TRAF domain profile. 38 172 IPR002083 GO:0005515
Phco6g00913 411 Gene3D Potassium Channel Kv1.1; Chain A 184 312 IPR011333 -
Phco6g00913 411 Gene3D - 317 393 - -
Phco6g00913 411 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 37 177 IPR008974 GO:0005515
Phco6g00913 411 ProSiteProfiles BTB domain profile. 208 267 IPR000210 GO:0005515
Phco6g00913 411 FunFam BTB-POZ and math domain 1 184 311 - -
Phco6g00913 411 SUPERFAMILY TRAF domain-like 35 174 - -
Phco6g00913 411 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 28 375 IPR045005 GO:0016567
Phco6g00913 411 Pfam BTB/POZ domain 199 315 IPR000210 GO:0005515
Phco6g00913 411 CDD MATH 39 172 IPR002083 GO:0005515
Phco6g00913 411 MobiDBLite consensus disorder prediction 10 35 - -
Phco6g00913 411 CDD BACK_AtBPM-like 314 377 IPR034090 -
Phco6g00913 411 SMART math_3 43 155 IPR002083 GO:0005515
Phco6g00913 411 CDD BTB_POZ_BPM_plant 194 314 - -
Phco6g00913 411 FunFam BTB-POZ and math domain 1 317 394 - -
Phco6g00913 411 MobiDBLite consensus disorder prediction 1 35 - -
Phco6g00913 411 SUPERFAMILY POZ domain 185 315 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00913 Phco-Chr6 8886946 8891572 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00913 6 8886946 8891572 Phco6g00913 6 8886946 8891572 ECH
Phco2g01709 2 47377334 47381604 Phco6g00913 6 8886946 8891572 PCT