Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00694 ATGTCTACCTCTGCAGCTTCTCTTGCGCTCCCCACTCTCACTCTCCGAACACGCTACCCTCTCTCTTCTCCCAAATGCTTCTCCTCCTCTCTCTCCCTCACCCCTAATGCCAAACCCATCTCCATTTCTAACGTTTTCTTCAAACCCACCTTATCCCTCTCCTCGCGCTTCCTTCCCCGCGTCGCTGTCTCCTCCGATTACGACCAGGAAGAGGGCACCTTCAGCTCCGGCCAGAGCTTCTCCCCCGACCTTAAGCTCTTTGTCGGCAACCTTCCGTTCAGCGTAGACAGTGCGCAGCTCGCCGAGATCTTCGAAAACGCCGGGAATGTGGAGGTGGTTGAGGTGATTTATGATAAGACGACTGGGAGAAGCAGAGGATTTGGGTTTGTGACCATGTCTTCGGTTGAGGAGGTTGAAACGGCTGTTCAGCAGTTCAATGGATATGAACTGGATGGAAGGGCCTTGAAAGTGAATGCTGGGCCACCTCCGGCTCGGAATGAGAGTACATCTCGTTTTAGAAATTCTTCCCCCAGAGGTGGTGGTGGTGGTGATTTTTCGGATAGTGAAAACAAAGTCCATGTGAGTAATCTTGCTTGGGGTGTTGACAATGGAACACTGGAGTCGTTCTTTGGGGAATACGGAAAGGTCCTGGAAGCAAGGGTAATCTATGACAGGGACAGTGGACGATCAAGAGGCTTTGGATTTGTGACTTACAGTAGTGCCGATGAGGTCAGCAGTGCAATCCGGTCCTTGGATGGTGTGGACTTGAATGGCAGAGCTATACGAGTTGCATTAGCTGATTCCAAGCCCAGGCGGCCTAGAGGATTTTAA 831 0.5162 MSTSAASLALPTLTLRTRYPLSSPKCFSSSLSLTPNAKPISISNVFFKPTLSLSSRFLPRVAVSSDYDQEEGTFSSGQSFSPDLKLFVGNLPFSVDSAQLAEIFENAGNVEVVEVIYDKTTGRSRGFGFVTMSSVEEVETAVQQFNGYELDGRALKVNAGPPPARNESTSRFRNSSPRGGGGGDFSDSENKVHVSNLAWGVDNGTLESFFGEYGKVLEARVIYDRDSGRSRGFGFVTYSSADEVSSAIRSLDGVDLNGRAIRVALADSKPRRPRGF 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00694 276 FunFam Ribonucleoprotein A, chloroplastic 63 184 - -
Phco6g00694 276 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 84 162 IPR000504 GO:0003723
Phco6g00694 276 SMART rrm1_1 85 158 IPR000504 GO:0003723
Phco6g00694 276 SMART rrm1_1 191 264 IPR000504 GO:0003723
Phco6g00694 276 SUPERFAMILY RNA-binding domain, RBD 187 274 IPR035979 GO:0003676
Phco6g00694 276 CDD RRM2_NsCP33_like 191 266 - -
Phco6g00694 276 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 190 268 IPR000504 GO:0003723
Phco6g00694 276 SUPERFAMILY RNA-binding domain, RBD 77 187 IPR035979 GO:0003676
Phco6g00694 276 MobiDBLite consensus disorder prediction 156 188 - -
Phco6g00694 276 PANTHER OS02G0815200 PROTEIN 31 269 - -
Phco6g00694 276 Gene3D - 64 185 IPR012677 -
Phco6g00694 276 Gene3D - 186 276 IPR012677 -
Phco6g00694 276 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 86 156 IPR000504 GO:0003723
Phco6g00694 276 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 262 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00694 Phco-Chr6 6923465 6925562 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00694 6 6923465 6925562 Phco6g00694 6 6923465 6925562 ECH
Phco2g01981 2 50523419 50527570 Phco6g00694 6 6923465 6925562 PCT