Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g01499 ATGTCTCTTACCATGAAGCAGTGTCTACACCTCAGAAATTCCAATGTACTTGGTGTGATCTCTTTAATTATAATATTGGGATCACTAAATGTGAAGGTAGCAGAATGTAGGGTCATTGGATTGGGCAACAATGAATATTCTGCAATCAATTGTCGAAAGCACAGTGCACTTTTGACAGATTTTGGTGGAGTTGGTGATGGGAAAACATCCAACACAAAGATCTTTGCATCTGCCATAACCAAACTCAGCCAAAATGCTTCTGATGGAGGTGCAACCCTTATTGTGCCACCTGGGAAATGGCTAACTGGATCCTTTAATCTCACAAGCCATTTCACTCTTTTTCTTCAAAAGGATGCTGTTATTCTTGCTTCCCAGGATGAAAAAGAATGGCCTAGTCTTGCTGTACTACCTTCTTATGGAAAAGGAAGAGATGCTCCTGGTGGAAGGTTTAGCAGTCTAATTTTTGGGAATAATCTCACTGATGTTGTAATTACCGGTCAAAATGGTACAATTGATGGACAAGGATCTTATTGGTGGGTCAAGTTCAAAAAGAAGGAATTTACTCTCACTAGGCCCTACATGATTGAGATCATGTTCTCAGATCAAATCCAAATATCAAATATCACTTTGATCAATTCCCCAAGTTGGTTTGTCCATCCAATTTACAGCAGTAACATAATTATAAAAGGGCTCACCATTCTTGCCCCAGTGGACTCTCCTAATACAGATGGAATAGATCCAGATTCATGCACAAACACTAGGATTGAAGACTGCTACATTGTTTCTGGTGATGATTGCATTTCACCAAAAAGTGGTTGGGATGGGTATGGAGTTAAATTTGGAAAGCCAACAAAACAATTAGTCATTAGAAGGATCACTTGTATATCCCCAGACAGTGCCATGGTTGCATTAGGCAGTGAAATGTCTGGTGGAATTGAAGATGTTAGGGTTGAAGATCTCACTGCCATCGATACTCAATCAGCTGTTAGAATCAAAACAGCAGTTGGTAGAGGTGCATATGTGAAGAACATATATGTTAGACGATTGAATCTGAACACCATGAAATATGTATTTTGGATGACTGGCTCTTATGGGTCACACCCTGACCCTGACTTTGATCCCAAAGCACTTCCTGTTATTACCGGAATAAATTATAAAGATGTTGTTGCGAAGAACGTTACATATGCTGCAAGACTTGAAGGAATGCCTAATAACCCTTTCACTGGAATCTGCATTTCTAATGTGACAATCCAAGTGAGTGAAGAACAAAAGAAGCTTCAATGGAATTGCACTGATATTGCTGGAGTTACCAATAATGTCACTCCTAGCCCTTGTGAAGTGCTGCCACAGAAAGATAAAACTGATTGTGTTTTTCCAAATGACAAACTACCCATTGAAGATGTTCAACTCAAGTCATGTTCCTTGTAA 1428 0.3943 MSLTMKQCLHLRNSNVLGVISLIIILGSLNVKVAECRVIGLGNNEYSAINCRKHSALLTDFGGVGDGKTSNTKIFASAITKLSQNASDGGATLIVPPGKWLTGSFNLTSHFTLFLQKDAVILASQDEKEWPSLAVLPSYGKGRDAPGGRFSSLIFGNNLTDVVITGQNGTIDGQGSYWWVKFKKKEFTLTRPYMIEIMFSDQIQISNITLINSPSWFVHPIYSSNIIIKGLTILAPVDSPNTDGIDPDSCTNTRIEDCYIVSGDDCISPKSGWDGYGVKFGKPTKQLVIRRITCISPDSAMVALGSEMSGGIEDVRVEDLTAIDTQSAVRIKTAVGRGAYVKNIYVRRLNLNTMKYVFWMTGSYGSHPDPDFDPKALPVITGINYKDVVAKNVTYAARLEGMPNNPFTGICISNVTIQVSEEQKKLQWNCTDIAGVTNNVTPSPCEVLPQKDKTDCVFPNDKLPIEDVQLKSCSL 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g01499 475 Pfam Glycosyl hydrolases family 28 152 433 IPR000743 GO:0004650|GO:0005975
Phco5g01499 475 Gene3D - 42 443 IPR012334 -
Phco5g01499 475 SMART pbh1 250 271 IPR006626 -
Phco5g01499 475 SMART pbh1 28 53 IPR006626 -
Phco5g01499 475 SMART pbh1 312 333 IPR006626 -
Phco5g01499 475 SMART pbh1 223 249 IPR006626 -
Phco5g01499 475 PANTHER PECTIN LYASE-RELATED 25 467 - -
Phco5g01499 475 SUPERFAMILY Pectin lyase-like 54 459 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g01499 Phco-Chr5 50727719 50730795 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g01499 5 50727719 50730795 Phco5g01499 5 50727719 50730795 ECH
Phco5g01499 5 50727719 50730795 Phco2g01235 2 39331524 39336921 PCT